ID A0A2G2W7R0_CAPBA Unreviewed; 895 AA.
AC A0A2G2W7R0;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT41222.1};
GN ORFNames=CQW23_20076 {ECO:0000313|EMBL:PHT41222.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT41222.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT41222.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT41222.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT41222.1}.
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DR EMBL; MLFT02000008; PHT41222.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2W7R0; -.
DR STRING; 33114.A0A2G2W7R0; -.
DR Proteomes; UP000224567; Chromosome 8.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 9.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000224567};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 146..180
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 247..281
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 349..383
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 483..518
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 585..619
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 802..894
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 895 AA; 100279 MW; 49FAA0C9C624C13A CRC64;
MAALIHSPNY TTIPLSLLPL QPFNHSLFTC TSSLTTTKKT KDKQKSSLFL QNPSSKSHFV
QPLLTPQQIK DSNGSVETDS NSIDYANLLS VSVRCGDVEL TKIIHCSILK LEEEDVYLKN
GLIGAYVKLG YLNLAEKVFD SLWCPDVVSY TAIISAFAKS NRETEAFELF LEMRELGIEP
NEFTYVAILT ACIRSLNLEL GCQVHGLVVR LGYSSYTYVI NALMGLYSKC GLVEFVVLLF
NGMPQRDIVS WNTVIACMVE DSMYDRAFGM YRELRRNECL IADHFTLSTL LAASSRCLAV
REGQELHKHA LKSGLHGNLS VNNALIGFYT KCGTLKNVVD VFKRMPVKDV FSWTEMIVAY
MEFGHVDLAM EIFNSMPERN CVSYNALLAG FSQNNEGFKA LALFCRLLEG GMELNDCTLT
SVLNACGSIM ERKISEQIHA FILKLGLKSN DHIETSLVDM CTRCGRMDDA KKIFHQLPLD
HDNAIAFTSM ICAYARNGQP EEAISLFLAR HSEESLVFDE VALATILGVC GTLGILKLGE
QIHCYALKHG LTSDTGVGNA MISMYSKCGE MQSAIKTFEA MPAHDLVSWN GLLTCYVLHR
QGDEALDTWA KMEKLGVNPD SITCVLVISA YRYTSRNLVD YCQKFFSSMQ SSYNVNPTSE
HYAGFVGVLG YWGLLEEAEK IISAMPFEPK ASVWHALLDG CRLHVNASIG KRAMKNILAI
VPQDPSTFIL KSNLYSASGR WHCSELVRTE MREKGIRKIP GRSWIIFGDK VHSFFARDKL
HSQSKDVYSG VQILIFECLK AGYVPDTSFV LHEVEEHQKK EFLFYHSAKL AVTFGLLMTR
PGRPVRVMKN VLLCGDCHTF FKYVSVVTKR DIHIRDASGF HHFVNGKCSC RDTWC
//
