ID A0A2G2WJQ0_CAPBA Unreviewed; 538 AA.
AC A0A2G2WJQ0;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=U1-type domain-containing protein {ECO:0000259|SMART:SM00451};
GN ORFNames=CQW23_14633 {ECO:0000313|EMBL:PHT45475.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT45475.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT45475.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT45475.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT45475.1}.
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DR EMBL; MLFT02000006; PHT45475.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2WJQ0; -.
DR STRING; 33114.A0A2G2WJQ0; -.
DR Proteomes; UP000224567; Chromosome 6.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 1.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR47487; OS06G0651300 PROTEIN-RELATED; 1.
DR PANTHER; PTHR47487:SF3; U1-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF12874; zf-met; 1.
DR SMART; SM00451; ZnF_U1; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000224567}.
FT DOMAIN 295..329
FT /note="U1-type"
FT /evidence="ECO:0000259|SMART:SM00451"
FT REGION 1..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 215..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 337..392
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..70
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 219..294
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 337..354
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 538 AA; 59427 MW; C03CA711A57B5C73 CRC64;
MDSSSSSSSQ QNQYGYPPAA ASQQPYDPSR PSYYSNYQYP HQQHHMYQQQ QQQQQQQYQQ
PQQQYSSYYP PNYPNPYPQQ HPQTHQRWHY QEPPIHPPGV SMASHGQTQY PLLNQQNTYH
LPQRTDGVGL GLNPQASVAV AGLAQLNQLA GAVGAPQGQN WYPQPQGFGP VIGGPDHPVI
HGSDIWYPLT ENGKTFHIHI DVAIPNHLLR CDNKAGQSLD KGGGRRRDGG RRRDGGRRGD
GQSMGGGRRR GDGRSKDGGR RRGDGQSKDG GRRGDGESRV GGRRRRDGQN KDVGRGKFMC
EMCKVDCGCP GILRMHLNGK RHKRNLEKLE ANENKTVSDV KNVQEPSADL ESGTAMKSDN
LLVEDETKGR TVSDTENVQK PSGDLEPATA VKPDNLLVEE ETKGRTVRDV ENVQKPSGDL
EPGTAVKPDN LLVEEETKDQ TVSDIEYVQK PSADLEPGTA MKPDNLLVEE ETKGRTVSDI
ENVQKLSGDL EPGTAMKPDN LLVEEETKGR MVSDIENGQK PSADLEPGTA MCRNLLLI
//
