ID A0A2G2XAA2_CAPBA Unreviewed; 1312 AA.
AC A0A2G2XAA2;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE SubName: Full=Putative lysine-specific demethylase JMJ16 {ECO:0000313|EMBL:PHT54400.1};
GN ORFNames=CQW23_08862 {ECO:0000313|EMBL:PHT54400.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT54400.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT54400.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT54400.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT54400.1}.
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DR EMBL; MLFT02000003; PHT54400.1; -; Genomic_DNA.
DR STRING; 33114.A0A2G2XAA2; -.
DR Proteomes; UP000224567; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0032453; F:histone H3K4 demethylase activity; IEA:UniProt.
DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR GO; GO:0010468; P:regulation of gene expression; IEA:UniProt.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF113; PROTEIN JUMONJI; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Methyltransferase {ECO:0000313|EMBL:PHT54400.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000224567};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000313|EMBL:PHT54400.1}.
FT DOMAIN 139..180
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 339..505
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 43..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 707..761
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 823..871
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..93
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 737..756
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 826..849
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1312 AA; 146741 MW; 9197C63288905EC4 CRC64;
MGTELVRHCM KEEDMDISAI PPGFESLAPF TLKNVENNRL MINQSSPVSE SKSHRSQEET
NIEGNEDGKK MKSLRRKPGV NYGKYEKSSE DESGSDQNSS VRPSLPKGVI RGCEGCANCQ
RVNARCRPEE ASRPDIGDAP VFYPTEEEFE DTLTYMASIR TKAEAYGICR IVPPASWKPP
CPLKEKTMWE NSKFVTRVQR IDKLQNRDSM RRTWEANTPK KKKRRRCLKT GVDLGNGNVA
NRSPGEAAIF EAERFGFEPG PEFTLDAFQK YADDFKAQYF RQNEGQCEPS WENIEGEYWR
MVEKPTEEIE VLYGADLETG VFGSGFPKHN HQVGSSDTKY VNSGWNLNNF PRLPGSVLTY
ESCDISGVLV PWLYIGMCFS SFCWHVEDHH LYSLNYMHLG APKMWYGVPG ADAIKLEAAM
RKHLPDLFEE QPDLLHKLVT QLSPSILKSE GVPVYRVVQN PGDFVLTFPR AYHAGFNCGF
NCAEAVNVAP VDWLPHGQNA IELYREQGRK TSISHDKLLL GAARDAVKAH WELNLLRKNT
SNNLRWKDLC GKDGILSKAL KNRVEMERVR REFLCQSSQT LTMESTFDAT SERECYVCFF
DLHLSAAGCH RCSPDKYACL NHAKQLCTCS WGSKFFLFRY RIEELNVLVD AVEGKLSAIY
RWARQDLGLA LSSYVNKERQ LAGLAGKLSC KPEESVLKET SSGLPIASVK KEKDDGNPSL
LPKASSSAFP LPKDEQSREP LTSSMPDNTS HGIEGIKNGF QSKHDESIKS VPAYRTPFTQ
LSVEGGSYSK KLSTDKHEVK GTSGLGDGDG DVILLSDDEG EDMNNSIPSR DNVGKQTVNR
GNSDKPVATA SIDSARVTED GINGSPGSDS VKVKDNAKVE IHRRLNQETR SFVGGSSVNM
DIDKHAQDSQ VAKGTSGCNI RDTDSCTQPR QPFDCKPNKE DNQNKEMECA KPLSSDFPIS
QNNLDRQFRQ KGPRIAKVVR RLSCNVEPLD YGVIQPGKLW CDSGAIYPKG FRSRVRYIDV
LDPTNMCHYV SEILDAGREG PLFMVSLEHC PNEVFVHLSA AKCWDMVRER ANQEIAKQHK
LGKLKLPPLQ PPGSVDGMEM FGFTTPAITQ VIQAMDQNRV CSEFWRSKPL MQIAQSSLAV
ESLKPNIKSE ISNDPTVADT VLSGLFKKAN CEELHALNNL LKPNNLTSNQ GIMTRLLNEE
IEKRGKSHCS LGIPSLEKAA ESMKRCDNKI VCVDIKKLSE GIQPIQSRND DGLKLYIKLK
KLLSDFIMYL LCITMMDKIG EDIQFDREIG AVICVEGMET DALALSVVET QN
//
