ID A0A2G2XFF4_CAPBA Unreviewed; 921 AA.
AC A0A2G2XFF4;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0008006|Google:ProtNLM};
GN ORFNames=CQW23_04675 {ECO:0000313|EMBL:PHT56189.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT56189.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT56189.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT56189.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT56189.1}.
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DR EMBL; MLFT02000002; PHT56189.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2XFF4; -.
DR STRING; 33114.A0A2G2XFF4; -.
DR Proteomes; UP000224567; Chromosome 2.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 3.30.430.20; Gnk2 domain, C-X8-C-X2-C motif; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR002902; GNK2.
DR InterPro; IPR038408; GNK2_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF22; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF01657; Stress-antifung; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS51473; GNK2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000224567};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Signal {ECO:0000256|ARBA:ARBA00022729};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 3..105
FT /note="Gnk2-homologous"
FT /evidence="ECO:0000259|PROSITE:PS51473"
FT DOMAIN 253..268
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 490..654
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 219..247
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 733..768
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 736..762
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 921 AA; 104685 MW; AF7F9012695B3737 CRC64;
MYYLSFRECG VNGDYTENST YKKNLNTLLT SLSSKLDKYG FSNASIGQNA DIVSVIVLCR
GDLEMEKCRT CVNNIAQQIV KSCPKQKIAL GGYEECMIKY SNQSIKDTES IFSPFNFSSI
KDASGSVEFN QELRKLLESL RVVAAADDRK YASGNATGLI VNDVFQVAAI VEKLPPLWKD
FKNYLKHKRK EMTVEDLIVR LQIEEDNKVV ERRSKGNSTM NGAHIVEDGQ NNSKKRKNVE
HGSNHPKKKF KGKCFNCDKV GHKSTDCRAP KKGKKKDQAN LIESNKDYDD LCAMFTECNM
VGNSRAWLMD SGATCHVCTS KELFSTYAPA QAEETIYMAN SATAKVEGIG KACLKMTSGK
VLTLNNVLYV LELRRNLISV SLLDKNGFKC VTVSEKIVVS KGEMYVGKGY LKEGLYKMNV
MNVEMNKNSN SSYLLESYNL WHERLGHVNY KTLRKLINLE VLPNFECNKS KCQTCVESKY
AKHPYKSVER NSNPLDLIHT DICDMKSTPS RGGKKYFITF IDDCTRYCYV YLLNSKDEAI
DAFRQYKTEV ENQLDKRIKM IRSDRGGEYE SPFAQICVEN GIIHQTTAPY SPQSNGIAER
KNRTLKEMMN ALLISSGLPQ NLWGEAILTA NRILNRVPHS KTQSIPYEKW KGRKPNLKYF
KVWGCLAKVQ VPIPKRVKIG PKTVDCVFIG YAKSSKACRF LVHKSEHSDI NENTVIESDN
AEFFENIYPY KTRHEQSSGG SKRPRDEPSE NVHNEENPRR STRQRTSTSF GSDFVTFLLE
NEPRTFKEAM SSSDSSFWKE AVNSEIDSIL SNHTWELVDL PPGNKPLGSK WIFKRKMKTD
GTIDKYKARL VVKGFNQKEG LDYFDTYSPV TRITSIRMLI ALAAVYDLQI HQMDVKTAFL
NGELEEEIYM EQPEGFVVPG K
//
