ID   A0A2G2YYY9_CAPAN        Unreviewed;       906 AA.
AC   A0A2G2YYY9;
DT   31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT   31-JAN-2018, sequence version 1.
DT   27-MAR-2024, entry version 16.
DE   RecName: Full=FF domain-containing protein {ECO:0000259|PROSITE:PS51676};
GN   ORFNames=T459_22231 {ECO:0000313|EMBL:PHT74954.1};
OS   Capsicum annuum (Capsicum pepper).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX   NCBI_TaxID=4072 {ECO:0000313|EMBL:PHT74954.1, ECO:0000313|Proteomes:UP000222542};
RN   [1] {ECO:0000313|EMBL:PHT74954.1, ECO:0000313|Proteomes:UP000222542}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CM334 {ECO:0000313|Proteomes:UP000222542};
RX   PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA   Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA   Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA   Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA   Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA   Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA   Bennetzen J.L., Choi D.;
RT   "New reference genome sequences of hot pepper reveal the massive evolution
RT   of plant disease-resistance genes by retroduplication.";
RL   Genome Biol. 18:R210.1-R210.11(2017).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PHT74954.1}.
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DR   EMBL; AYRZ02000008; PHT74954.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2G2YYY9; -.
DR   STRING; 4072.A0A2G2YYY9; -.
DR   EnsemblPlants; PHT74954; PHT74954; T459_22231.
DR   Gramene; PHT74954; PHT74954; T459_22231.
DR   Proteomes; UP000222542; Chromosome 8.
DR   GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
DR   GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR   GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR   Gene3D; 1.10.10.440; FF domain; 3.
DR   InterPro; IPR002713; FF_domain.
DR   InterPro; IPR036517; FF_domain_sf.
DR   InterPro; IPR039726; Prp40-like.
DR   PANTHER; PTHR11864:SF36; PRE-MRNA-PROCESSING PROTEIN 40A-LIKE ISOFORM X1; 1.
DR   PANTHER; PTHR11864; PRE-MRNA-PROCESSING PROTEIN PRP40; 1.
DR   Pfam; PF01846; FF; 2.
DR   SMART; SM00441; FF; 3.
DR   SUPFAM; SSF81698; FF domain; 3.
DR   PROSITE; PS51676; FF; 3.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000222542}.
FT   DOMAIN          688..743
FT                   /note="FF"
FT                   /evidence="ECO:0000259|PROSITE:PS51676"
FT   DOMAIN          765..819
FT                   /note="FF"
FT                   /evidence="ECO:0000259|PROSITE:PS51676"
FT   DOMAIN          837..900
FT                   /note="FF"
FT                   /evidence="ECO:0000259|PROSITE:PS51676"
FT   COILED          813..852
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   906 AA;  101234 MW;  AB6E6FB4DF3123C1 CRC64;
     MDIKQLQANL AITVRVHQNS TCGAAENIGT AAKPNGIMHE PHLSVTDPLA ARQDALQSIV
     IRRREGFRRK DQNSSVSSSE GYGSSVKRIR SADAGHLGNA TMPCTGDGST WNNIEGINSD
     KSIDSGRPSL ALRSSSCRSV VQEPEVGSSY VDRNLEHNIS LVVCSSSGLK SQGGDSSKST
     SANQQILDLN LALAFQEKLS DPRITSILKQ KGRHTDRELA NLLQDKGLDP NFAVMLKENG
     LDPKILALLQ RSSLDADREH RDSNPPVTNS NNVEDVLPNH ISFSAYYISN ERYSNYLSND
     TNFAKFRHPR KKLWLYKVEY VVQHKPLIPP LAGPAPGAIP SMSLQQFQPM LPSQQAQPYG
     SESSQQFFPL GHANVAMSQP SQIQFPQPMQ QVTGRPVVGM HSMPQGPPTP HDFQGNLPML
     NNHMPGSGDP NLPLSSSYNQ VNADSSSFQY QTQINDHRFP SGVQPWMPIS NHNVNSETTV
     QKTGELAAPL VVLVTYMNSL MSASETLNVL SMNKWWIYGS LVSAHGAKSS PIAVSPAANL
     PTIMASESSS LFGKVSSPMI ETVEMKNSSE PASPAVANSE KIGIVVTLGN SVAPPVSETT
     TTQDAVVYGD GFSSKNGENV KKDAAVTEIR GATPVELGPL VYKSKTEAKS AFKTLPESVN
     IRSDCMWDQY QYLSQKKTLE AEERRVKQKK AWEDFRIMLE DCKELSPSSR WSKAISIFEH
     DERFKAVEQA KDREDLFEDY VEELEKKVKL LLQNFLEHAK ALEEQKCNKV EYLEFLKSCD
     FIMASSQWRK VQDCFETDER CSRLERIERL EIFQEYIRDL ESEEEEQRKW RMEKLRKAER
     KNRDEFQKLM EEHVPAGILN AKINWRDYCI KIKDFAAYLA VSSNTSGSTR KDLFTDVMDE
     LEKQVK
//