ID A0A2G5SK26_9PELO Unreviewed; 610 AA.
AC A0A2G5SK26;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 13-SEP-2023, entry version 22.
DE RecName: Full=LTD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=Cnig_chr_X.g22371 {ECO:0000313|EMBL:PIC15367.1};
GN ORFNames=B9Z55_022371 {ECO:0000313|EMBL:PIC15367.1};
OS Caenorhabditis nigoni.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=1611254 {ECO:0000313|EMBL:PIC15367.1, ECO:0000313|Proteomes:UP000230233};
RN [1] {ECO:0000313|Proteomes:UP000230233}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JU1422 {ECO:0000313|Proteomes:UP000230233};
RA Yin D., Schwarz E.M., Thomas C.G., Felde R.L., Korf I.F., Cutter A.D.,
RA Schartner C.M., Ralston E.J., Meyer B.J., Haag E.S.;
RT "Rapid genome shrinkage in a self-fertile nematode reveals novel sperm
RT competition proteins.";
RL Submitted (OCT-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|PIRNR:PIRNR005546}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PIC15367.1}.
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DR EMBL; PDUG01000006; PIC15367.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G5SK26; -.
DR STRING; 1611254.A0A2G5SK26; -.
DR Proteomes; UP000230233; Chromosome x.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-UniRule.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 2.60.40.1260; Lamin Tail domain; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR016451; Intermed_filament_ifa/ifb.
DR InterPro; IPR001322; Lamin_tail_dom.
DR InterPro; IPR036415; Lamin_tail_dom_sf.
DR PANTHER; PTHR45721:SF9; INTERMEDIATE FILAMENT PROTEIN IFA-2-RELATED; 1.
DR PANTHER; PTHR45721; LAMIN DM0-RELATED; 1.
DR Pfam; PF00038; Filament; 1.
DR Pfam; PF00932; LTD; 1.
DR PIRSF; PIRSF005546; Intermed_filamnt_Ifb-2; 1.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR SUPFAM; SSF74853; Lamin A/C globular tail domain; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
DR PROSITE; PS51841; LTD; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|PIRNR:PIRNR005546};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|PIRNR:PIRNR005546};
KW Reference proteome {ECO:0000313|Proteomes:UP000230233}.
FT DOMAIN 99..452
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT DOMAIN 484..601
FT /note="LTD"
FT /evidence="ECO:0000259|PROSITE:PS51841"
FT REGION 1..62
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 77..96
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 591..610
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 153..257
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 343..430
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1..19
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..62
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..91
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 610 AA; 70536 MW; BE754FD616991C32 CRC64;
MEKKKMIRRR PRKKNSRNHH HVRQPDDVRM SEDTYRSSIT SRPSFNRLST SSTQNYGTPG
SGNRVLKIVT EMSSSSVASG LSPYGQNAAS TIRDNREREK KEIMELNDRL AGYIEKGRFL
EGQNRRLEAD LQMLQGRFGK STGSVKVMYE LEITTAQTVV KQTEKDKEET ESEIRQLQDQ
LDEFRKKWEE ANSGRAEDRL KIDELLVNFS ELEAEINLLK RRIALLEEEI AWLKKENARL
QAELQRVRVQ LDQETLLRID NQNRVKTLLE EIDFMKRGFD SELKDLQAMA VRDTTNENRE
IFKNELANAI RDIRAEYDQM MNGSKNECES WYQLRVQEIN TQSNRQNAEN NYQKEEVKRL
RNQTSELRGK LSDLEARNVL LEKQIEDLNY QLEDDQRSYE AALNDKDAQI RKLREECQAL
MVDLQMLLDA KQNLDGEIKV YRQILDGPDT EGLKQLVERV VRTSAITEVA DTETMRVIKG
EHSSKKSYQR SAKGNVSIEE SCADGKFVIL RNTNTSKEEP LGDWKLKRKI DGKREIVFTF
PSDYILQPSK TVKIFARGHG VASPPDTLVF EGEDTFGVGA NIQTILYNNK GEKRATESQR
QSQQTTTSQS
//
