ID A0A2G5VTQ5_9PELO Unreviewed; 728 AA.
AC A0A2G5VTQ5;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 24-JAN-2024, entry version 10.
DE RecName: Full=SSD domain-containing protein {ECO:0000259|PROSITE:PS50156};
GN Name=Cni-ptr-11 {ECO:0000313|EMBL:PIC54926.1};
GN Synonyms=Cnig_chr_I.g413 {ECO:0000313|EMBL:PIC54926.1};
GN ORFNames=B9Z55_000413 {ECO:0000313|EMBL:PIC54926.1};
OS Caenorhabditis nigoni.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=1611254 {ECO:0000313|EMBL:PIC54926.1, ECO:0000313|Proteomes:UP000230233};
RN [1] {ECO:0000313|Proteomes:UP000230233}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JU1422 {ECO:0000313|Proteomes:UP000230233};
RA Yin D., Schwarz E.M., Thomas C.G., Felde R.L., Korf I.F., Cutter A.D.,
RA Schartner C.M., Ralston E.J., Meyer B.J., Haag E.S.;
RT "Rapid genome shrinkage in a self-fertile nematode reveals novel sperm
RT competition proteins.";
RL Submitted (OCT-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the patched family.
CC {ECO:0000256|ARBA:ARBA00005585}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PIC54926.1}.
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DR EMBL; PDUG01000001; PIC54926.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G5VTQ5; -.
DR Proteomes; UP000230233; Chromosome i.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 1.20.1640.10; Multidrug efflux transporter AcrB transmembrane domain; 1.
DR InterPro; IPR003392; Ptc/Disp.
DR InterPro; IPR000731; SSD.
DR PANTHER; PTHR10796; PATCHED-RELATED; 1.
DR PANTHER; PTHR10796:SF108; SSD DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF02460; Patched; 1.
DR SUPFAM; SSF82866; Multidrug efflux transporter AcrB transmembrane domain; 1.
DR PROSITE; PS50156; SSD; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000230233};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 28..48
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 249..268
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 280..304
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 311..332
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 352..373
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 380..405
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 440..460
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 651..684
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 696..717
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 249..406
FT /note="SSD"
FT /evidence="ECO:0000259|PROSITE:PS50156"
SQ SEQUENCE 728 AA; 81177 MW; E895036368DFC2E0 CRC64;
MVTLQPAARM GWDTISAVVA RILAAYPVYS ILLSILSILA LSAGLVNIRL EPDIRKSFSP
EDSDAGYETR VWLEYYGLKI YPERAFCIFT AKSEDGSILQ EEALRDIYTV DTRLVQAVGL
RDGDGRRNCD PLCDLNSPFH LLANQTRKNN GTTAVFTYPD MPYSGLDIFL GLHFSNVDFK
PPTHRISSRS LVLWYFSRSD TPEGKLAFKD AIDELFDLSK NSSAFENVEF TIFSDQVANR
EMIRGAIEAT TLMTIGFFLL LTQVIIVIKR LSSIKMTAYL VTTSLLTPMA ATIASFGAIC
WMGFPSFSIQ CVTPFLVLGI GVDDAFILLH RWKHHIAISD TPRRLEQVIV DVGPSITITS
LTNIIAFGIG FFTPTPQMSL FCLTASLALL LDYIFTYTIL APIVFLCNDP TYQSVPKDET
ISKADTWLAK YSRFVCSLRG RIVCIFVLIG MYGLTTYGVM TMRTTFEPAK AFPSNSKLVD
SLSNIKPVFN RYFPITVIVN NPPNISNEIE YDSFHNMMNR LEHVPGIRGD NRSLIFLPQY
EAYDKLANSF SILLGDKYRP SYDSLPNWMD AIGNPPLVKY HLDENNKTIV TSFRLTLLGK
GMSEWAERAR AMQHIRTVLR EEQQFNATLF DCDSAILSII LTVGTDLIGS IAVTVVCMAI
VCFVFIANFN AVAVITSIIA SICYDHNSDP PNTMNAIYTA ILVASTLAYS AVAWIGLSMD
PTASEDLF
//