ID A0A2G9HFS1_9LAMI Unreviewed; 200 AA.
AC A0A2G9HFS1;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 22-FEB-2023, entry version 14.
DE RecName: Full=Pre-mRNA cleavage factor Im 25 kDa subunit {ECO:0000256|PIRNR:PIRNR017888};
GN ORFNames=CDL12_10990 {ECO:0000313|EMBL:PIN16356.1}, CDL12_13909
GN {ECO:0000313|EMBL:PIN13470.1};
OS Handroanthus impetiginosus.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance;
OC Handroanthus.
OX NCBI_TaxID=429701 {ECO:0000313|EMBL:PIN16356.1, ECO:0000313|Proteomes:UP000231279};
RN [1] {ECO:0000313|EMBL:PIN16356.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=UFG-1 {ECO:0000313|EMBL:PIN16356.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:PIN16356.1};
RA Sun Z.S., Albrecht U., Echele G., Lee C.C.;
RL Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000231279}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. UFG-1 {ECO:0000313|Proteomes:UP000231279};
RX PubMed=29253216; DOI=10.1093/gigascience/gix125;
RA Silva-Junior O.B., Grattapaglia D., Novaes E., Collevatti R.G.;
RT "Genome assembly of the Pink Ipe (Handroanthus impetiginosus,
RT Bignoniaceae), a highly valued, ecologically keystone Neotropical timber
RT forest tree.";
RL Gigascience 7:1-16(2018).
RN [3] {ECO:0000313|EMBL:PIN16356.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=UFG-1 {ECO:0000313|EMBL:PIN16356.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:PIN16356.1};
RA Silva-Junior O.B., Novaes E., Grattapaglia D., Collevatti R.G.;
RT "Genome assembly of the pink ipe (Handroanthus impetiginosus,
RT Bignoniaceae), a highly-valued ecologically keystone neotropical timber
RT forest tree.";
RL Gigascience 0:0-0(2018).
CC -!- FUNCTION: Component of the cleavage factor Im (CFIm) complex that plays
CC a key role in pre-mRNA 3'-processing. {ECO:0000256|PIRNR:PIRNR017888}.
CC -!- SUBUNIT: Homodimer. Component of the cleavage factor Im (CFIm) complex.
CC {ECO:0000256|PIRNR:PIRNR017888}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR017888}. Note=In
CC punctate subnuclear structures localized adjacent to nuclear speckles,
CC called paraspeckles. {ECO:0000256|PIRNR:PIRNR017888}.
CC -!- SIMILARITY: Belongs to the Nudix hydrolase family. CPSF5 subfamily.
CC {ECO:0000256|PIRNR:PIRNR017888}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PIN16356.1}.
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DR EMBL; NKXS01002473; PIN13470.1; -; Genomic_DNA.
DR EMBL; NKXS01001884; PIN16356.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G9HFS1; -.
DR STRING; 429701.A0A2G9HFS1; -.
DR OrthoDB; 142507at2759; -.
DR Proteomes; UP000231279; Unassembled WGS sequence.
DR GO; GO:0005849; C:mRNA cleavage factor complex; IEA:UniProtKB-UniRule.
DR GO; GO:0003729; F:mRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006378; P:mRNA polyadenylation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.90.79.10; Nucleoside Triphosphate Pyrophosphohydrolase; 1.
DR InterPro; IPR016706; Cleav_polyA_spec_factor_su5.
DR PANTHER; PTHR13047:SF0; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5; 1.
DR PANTHER; PTHR13047; PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT; 1.
DR Pfam; PF13869; NUDIX_2; 1.
DR PIRSF; PIRSF017888; CPSF-25; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|PIRNR:PIRNR017888};
KW Nucleus {ECO:0000256|PIRNR:PIRNR017888};
KW Reference proteome {ECO:0000313|Proteomes:UP000231279};
KW RNA-binding {ECO:0000256|PIRNR:PIRNR017888}.
SQ SEQUENCE 200 AA; 22973 MW; 4081E105DD844DC0 CRC64;
MVTSAVVNTY PLSSYTFGTK EPKMEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN
HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA ANSPSLQPDW QIGECVAIWW
RPNFETIMYP YCPPHITKPK ECKKLFLVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG
PVISTIPQQL SRFQFNMIHP
//
