ID A0A2H5QIJ9_CITUN Unreviewed; 1138 AA.
AC A0A2H5QIJ9;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN ORFNames=CUMW_233760 {ECO:0000313|EMBL:GAY64457.1};
OS Citrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus.
OX NCBI_TaxID=55188 {ECO:0000313|EMBL:GAY64457.1, ECO:0000313|Proteomes:UP000236630};
RN [1] {ECO:0000313|EMBL:GAY64457.1, ECO:0000313|Proteomes:UP000236630}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Miyagawa wase {ECO:0000313|Proteomes:UP000236630};
RX PubMed=29259619; DOI=10.3389/fgene.2017.00180;
RA Shimizu T., Tanizawa Y., Mochizuki T., Nagasaki H., Yoshioka T., Toyoda A.,
RA Fujiyama A., Kaminuma E., Nakamura Y.;
RT "Draft sequencing of the heterozygous diploid genome of Satsuma (Citrus
RT unshiu Marc.) using a hybrid assembly approach.";
RL Front. Genet. 8:180-180(2017).
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region.
CC {ECO:0000256|PIRNR:PIRNR000084}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAY64457.1}.
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DR EMBL; BDQV01000411; GAY64457.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2H5QIJ9; -.
DR STRING; 55188.A0A2H5QIJ9; -.
DR Proteomes; UP000236630; Unassembled WGS sequence.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.287.130; -; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Reference proteome {ECO:0000313|Proteomes:UP000236630};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT DOMAIN 215..384
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 609..679
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 751..794
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 893..1130
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 320
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1138 AA; 126059 MW; B52EA5AE73F2F2A9 CRC64;
MSSKSTNKTN YSRSSSARSK QNARVAAQTS IDAKLAEDFD ESDFDYSTSV NISSSTSNVP
SSTVSAYLQR VQRGRLIQPF GCMIAVDEQN FTVLGYSENA PEMLDLAPHA VPNIEQQDAL
TLGIDVRTLF TSSGAAALQK AANFGEVNLL NPILIHCKTS GKPFYAILHR IDVGLVIDLE
PVNPDDVPVT AAGALKSYKL AAKAISRLQS LPSGNISLLC DVLVNEVSDL TGYDRVMVYK
FHEDEHGEVV AECRRPDLEP YLGFHYPATD IPQASRFLIM KNKVRMICDC LAPPVKVIQD
KKLDQPLSLC GSTLRAPHGC HARYMENMGS IASLVMSVTI NEAEDELDND QEQGRKLWGL
VVCHHTSPRF VPFPLRYACE FLIQVFGVQV NKEVELSAQL REKHILRTQT VLCDMLLRDS
PVGIVTQTPN VMDLVKCDGA ALYYRGKLWL LGVTPTEEQI KDIAKWLLEY HRGSTGLSTD
SLVEAGYPGA LALGDAVCGI AAVKITSKDF LFWFRSHTAK EIKWGGAKHD SGGKDGGRKM
HPRSSFKAFL EVVKQRSLPW EDVEMDAIHS LQLILRGSLQ DEVAEDSKMI VNVPSVDDRI
EKIDELRIIT NEMVRLIETA AVPILAVDAS GNVNGWNSKA AELTGLTVDQ AIGTALVDLV
AGDSVDVVKN MLSSAFLGIE ERNVEIKLRA FGPRETSGPV ILVVNACCTQ DTKENVIGVC
FVGQDITGQK LVMDKYTRIQ GDYVGIVSSP SALIPPIFMT DEDGRCLEWN DGMEKLSGLK
REEAIERMLI GEVFTVKNFG CRVKNHDTLT KLRIVMNKVI SGQDADKILF GFFDQQGKYV
EALLSANKRT NAEGKISGIL CFLHVASPEL QYALQVQRIS EQAAANSLNK LEYIRREIRK
PLNGIAFMQN LMGTSDLSEE QKQLLKTSVL CQEQLTNIVD DTDIESIEEC IRSSVMLSSC
FMFAINYMVL KSGEFNLGEA LDAVMTQVMI PSREHQVQII HDLPAEVSTM NLHGDKLRLQ
QVLSDFLTNA LIFTPAFEGS SIAFRVIPQK ERIGKNIHIV HLEFRITHPA PGIPEKLIHD
MFYHSQGASR EGLGLYISQK LVKLMNGTVQ YIREAERSSF LILIEFPLAH QKDADKTK
//
