ID A0A2I0AYR7_9ASPA Unreviewed; 1471 AA.
AC A0A2I0AYR7;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=DNA polymerase sigma subunit {ECO:0000313|EMBL:PKA60674.1};
DE EC=2.7.7.7 {ECO:0000313|EMBL:PKA60674.1};
GN ORFNames=AXF42_Ash006308 {ECO:0000313|EMBL:PKA60674.1};
OS Apostasia shenzhenica.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
OC Apostasioideae; Apostasia.
OX NCBI_TaxID=1088818 {ECO:0000313|EMBL:PKA60674.1, ECO:0000313|Proteomes:UP000236161};
RN [1] {ECO:0000313|EMBL:PKA60674.1, ECO:0000313|Proteomes:UP000236161}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Shenzhen {ECO:0000313|Proteomes:UP000236161};
RC TISSUE=Stem {ECO:0000313|EMBL:PKA60674.1};
RX PubMed=28902843; DOI=10.1038/nature23897;
RA Zhang G.Q., Liu K.W., Li Z., Lohaus R., Hsiao Y.Y., Niu S.C., Wang J.Y.,
RA Lin Y.C., Xu Q., Chen L.J., Yoshida K., Fujiwara S., Wang Z.W., Zhang Y.Q.,
RA Mitsuda N., Wang M., Liu G.H., Pecoraro L., Huang H.X., Xiao X.J., Lin M.,
RA Wu X.Y., Wu W.L., Chen Y.Y., Chang S.B., Sakamoto S., Ohme-Takagi M.,
RA Yagi M., Zeng S.J., Shen C.Y., Yeh C.M., Luo Y.B., Tsai W.C.,
RA Van de Peer Y., Liu Z.J.;
RT "The Apostasia genome and the evolution of orchids.";
RL Nature 549:379-383(2017).
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DR EMBL; KZ451935; PKA60674.1; -; Genomic_DNA.
DR STRING; 1088818.A0A2I0AYR7; -.
DR OrthoDB; 21395at2759; -.
DR Proteomes; UP000236161; Unassembled WGS sequence.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:1990817; F:poly(A) RNA polymerase activity; IEA:InterPro.
DR GO; GO:0016070; P:RNA metabolic process; IEA:UniProt.
DR Gene3D; 1.10.1410.10; -; 1.
DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 1.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR002058; PAP_assoc.
DR InterPro; IPR002934; Polymerase_NTP_transf_dom.
DR InterPro; IPR045862; Trf4-like.
DR PANTHER; PTHR23092:SF48; NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN; 1.
DR PANTHER; PTHR23092; POLY(A) RNA POLYMERASE; 1.
DR Pfam; PF01909; NTP_transf_2; 1.
DR Pfam; PF03828; PAP_assoc; 1.
DR SUPFAM; SSF81301; Nucleotidyltransferase; 1.
DR SUPFAM; SSF81631; PAP/OAS1 substrate-binding domain; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:PKA60674.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000236161};
KW Transferase {ECO:0000313|EMBL:PKA60674.1}.
FT DOMAIN 1180..1223
FT /note="Polymerase nucleotidyl transferase"
FT /evidence="ECO:0000259|Pfam:PF01909"
FT DOMAIN 1420..1457
FT /note="PAP-associated"
FT /evidence="ECO:0000259|Pfam:PF03828"
FT REGION 437..536
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 944..975
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 988..1015
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1028..1054
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 504..536
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 944..964
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 993..1008
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1028..1042
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1471 AA; 161855 MW; 8E17FCD0AB0CD0C2 CRC64;
MDSLSYRLVH SLTAHLALYH SSSSSPNPNS TLRASLLRWF SSLSPGHRQA ALTVCDAPFV
LVLLQMQSHL RRFGHSHFLL LPDLPSSSGS SSLPSLSFRT SRGLLSRLAA SSSSAFLFNS
SILLFSSSGA CPVDALTVSE SLVADVDRFV VVMDKLSGGR FLCEEMEVIG LTALWAELPW
LKDMGYYSLE AFVANRLEVA LRLAWFSSQG GKKPKEKRAK EKASQVAGKA ANVFWRTKGR
FDWWVGLDPG KRRAIISTFF GKAAKALANE IINNENASLR NDFGFLCIET SPSLRYGAIS
SWQRAKQAFL RKDVDFGLDF VTIASSNIPN RLAMFLNKLL VVHDISNMYL LWQPNKIEYD
KLFFSSFSSV LTISHHIMRK LERTLIAVHA DIINHELVED SKLRIACRKG KGKSQSSKKS
YTVPKAYMVI STSQESSKKL DFDTEPCSRE RTSSPIAAEN NEHGDSYVED ASVSVESNHP
CKRKNRRKGT KNKSSKNVQK SESENKDTFS SVPATRELEE SVSFDYTSNS RPESADVKTC
ANLEDTVEGH SFFSIGVCPD GEEGHPCSTD RERTVIKNAS PCVRKSEDSP CNISPSTSYF
VEQMDSLGGS KVVTSQKENF PAHAVEPDIV EHPSSCLPSD TASKSFVSQG YSRTVTGGQG
SVIQNGHSDC FVYRGTNSIG GISYEWPSRS PLHFTSIPAA TDRLHLDVGH GWPYHIHQSY
MPSNSQVGIS LNECGHSGIL PSLTFPMSYD SPLVVKNRGR PSQSLTISYE SAYSPSIPPP
FYSGLAACAA HGVQVCMASG DTDGKHNGEF FDVHDMKNGP EYVEDTDSYW LSEEESEVHT
KSGRDYNKFF GGGVMYWNPA EHVGTGFSRA PSHSSEDSSW AWHEAELNRT IDDMVGGKSG
LSYSTNGISS PPTSSYCSPF DSLASGHQSI GHAVAGNGTS CNVANSPSLS DPSDESSSPN
NSAVGIEGMK GDPHPYPMLR PIIIPGMSRK GSRSDFKLGR DHKSPSIATT RRDTPWIKRP
PSPVVLCVPR VPRPPPPSPV GESRKRGFPI VRSGSSSPRH WGLKSWFHEE NNTADTRLCL
DGAEVVWPTW ANKNIGVTTV SQSLQGSLLQ DHLIAISQLT RDQEHPDVAL PLQPPDLVNG
PSKALLSTMQ NLLHEEIDFF CKQVAAENLV RKSYINWAVK RVTRSLQVLW PRSRTNLFGS
NATGLALPTS DVDLVVSLPP VRNLEPIKEA GILEGRNGIK ETCLQHAARY LANQEWVRND
SLKTIENTAI PIIMLVADVA GDMTFSTGNT AALFVPETKS PKISVEHCCS SEINLCNLET
ELSPNSSAMK QSDAVCVKSI RVDISFKSAS HTGLQTSELV RELTQQFPAS VPLALVLKKF
LADRSLDHSY SGGLSSYCLV LLITRFLQHE HHCGHSINQN LGSLLMDFLY FFGNVFDPRQ
MRVSIQGTGV YMKRERGLRS VLYLHMYHMI S
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