ID A0A2I0KDZ4_PUNGR Unreviewed; 988 AA.
AC A0A2I0KDZ4;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=110 kDa U5 small nuclear ribonucleoprotein component CLO {ECO:0000313|RefSeq:XP_031386725.1};
GN Name=LOC116200144 {ECO:0000313|RefSeq:XP_031386725.1};
GN ORFNames=CRG98_012936 {ECO:0000313|EMBL:PKI66741.1};
OS Punica granatum (Pomegranate).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Myrtales; Lythraceae; Punica.
OX NCBI_TaxID=22663 {ECO:0000313|EMBL:PKI66741.1, ECO:0000313|Proteomes:UP000233551};
RN [1] {ECO:0000313|EMBL:PKI66741.1, ECO:0000313|Proteomes:UP000233551}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AG2017 {ECO:0000313|EMBL:PKI66741.1}, and cv. AG2017
RC {ECO:0000313|Proteomes:UP000233551};
RC TISSUE=Leaf {ECO:0000313|EMBL:PKI66741.1};
RA Akparov Z., Amiraslanov A., Hajiyeva S., Abbasov M., Kaur K., Hamwieh A.,
RA Solovyev V., Salamov A., Braich B., Kosarev P., Mahmoud A., Hajiyev E.,
RA Babayeva S., Izzatullayeva V., Mammadov A., Mammadov A., Sharifova S.,
RA Ojaghi J., Eynullazada K., Bayramov B., Abdulazimova A., Shahmuradov I.;
RT "De-novo sequencing of pomegranate (Punica granatum L.) genome.";
RL Submitted (NOV-2017) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|RefSeq:XP_031386725.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_031386725.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; PGOL01000658; PKI66741.1; -; Genomic_DNA.
DR RefSeq; XP_031386725.1; XM_031530865.1.
DR STRING; 22663.A0A2I0KDZ4; -.
DR OrthoDB; 166721at2759; -.
DR Proteomes; UP000233551; Unassembled WGS sequence.
DR Proteomes; UP000515151; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000233551};
KW Ribonucleoprotein {ECO:0000313|RefSeq:XP_031386725.1}.
FT DOMAIN 137..345
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..45
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 988 AA; 110721 MW; 80B5E16366FF3AB0 CRC64;
MDDSLYDEFG NYIGPEIESD QESDREEEDE ELPDRPTEEA AESDGEDAAA GTNGWITASN
DVDMENQVVL AEDKKYYPTA EEVYGEDVET LVMDEDEQPL EQPIIKPVRD IKFEVGVKDS
STYVSTQFLI GLMSNPALVR NVALVGHLHH GKTVFMDMLV EQTHHISTFD SSNEKHIRYT
DTRIDEQERR ISIKAVPMTL VLEDSNSKSY LCNIMDTPGH VNFSDEMTAA LRLADGAVLI
VDAAEGVMVN TERAIRHAIQ DRLPIVVVIN KVDRLITELK LPPRDAYHKL RHTIEVINNH
IAVASSKAGE VQVIDPAAGN VCFASATAGW SFTLQSFAKL YVKLHGIPFD AEKFATRLWG
DFYYHPNLRV FKKNPPSGGG ERSFVQFVLE PLYKIYSQVI GEHKKSVETT LAELGVTLSN
AAYKSNVKPL LRLACSSVFG SASGFTDMLI HHVPSAKDAA RKKVEHIYTG PHDSMIYEAM
ENCDPSGPLM VNVTKLYPKS DCSVFDAFGR VYSGEIQTGQ SLRVLGEGYS PDDEEDMTVK
EVTKLWIYQA RYRIPIAKAP PGSWVLIEGV DASIMKTATL CNVDYDEDVY IFRPLQFNTL
PVVKTATEPL NPSELPKMVE GLRKISKSYP LAITKVEESG EHTILGTGEL YLDSIMKDLR
ELYSEVEVKV ADPVVSFCET VVESSSMRCF AETPNRKNKI TMVAEPLEKG IAEDIENGVV
SIDWRKRELG EFFQRKYDWD LLAARSIWAF GPDKQGPNIL LDDTLSSEVD KTLLNSVKDS
IVQGFQWGAR EGPLCDEPIR NVKFKIVDAR IATEPLHRGS GQIIPTARRV AYSSFLLATP
RLMEPVYYVE IQTPIDCVSA IYTVLSRRRG HVTADVPQPG TPSYIVKAFL PVIESFGFET
DLRYHTQGQA FCMSVFDHWA IVPGDPLDKS IVLRPLEPAP IQHLAREFMV KTRRRKGMSE
DVSINKFFDE AMMVELAQHA ADQHHQII
//
