ID A0A2I0M985_COLLI Unreviewed; 148 AA.
AC A0A2I0M985;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 24-JAN-2024, entry version 14.
DE RecName: Full=Nuclear nucleic acid-binding protein C1D {ECO:0000256|ARBA:ARBA00015212, ECO:0000256|RuleBase:RU368003};
GN Name=C1D {ECO:0000313|EMBL:PKK26241.1};
GN ORFNames=A306_00008132 {ECO:0000313|EMBL:PKK26241.1};
OS Columba livia (Rock dove).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba.
OX NCBI_TaxID=8932 {ECO:0000313|EMBL:PKK26241.1, ECO:0000313|Proteomes:UP000053872};
RN [1] {ECO:0000313|EMBL:PKK26241.1, ECO:0000313|Proteomes:UP000053872}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Blood {ECO:0000313|EMBL:PKK26241.1};
RX PubMed=23371554; DOI=10.1126/science.1230422;
RA Shapiro M.D., Kronenberg Z., Li C., Domyan E.T., Pan H., Campbell M.,
RA Tan H., Huff C.D., Hu H., Vickrey A.I., Nielsen S.C., Stringham S.A.,
RA Hu H., Willerslev E., Gilbert M.T., Yandell M., Zhang G., Wang J.;
RT "Genomic diversity and evolution of the head crest in the rock pigeon.";
RL Science 339:1063-1067(2013).
RN [2] {ECO:0000313|EMBL:PKK26241.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Blood {ECO:0000313|EMBL:PKK26241.1};
RA Holt C., Campbell M., Edelman N., Keays D., Kapusta A., Domyan E., Suh A.,
RA Carleton J., Warren W., Yandell M., Gilbert M.T., Shapiro M.D.;
RT "Improved genome assembly and annotation for the rock pigeon (Columba
RT livia).";
RL Submitted (AUG-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Plays a role in the recruitment of the exosome to pre-rRNA to
CC mediate the 3'-5' end processing of the 5.8S rRNA.
CC {ECO:0000256|RuleBase:RU368003}.
CC -!- SUBUNIT: Monomer and homodimer. {ECO:0000256|RuleBase:RU368003}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU368003}.
CC Nucleus, nucleolus {ECO:0000256|RuleBase:RU368003}. Nucleus
CC {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|RuleBase:RU368003}.
CC -!- SIMILARITY: Belongs to the C1D family. {ECO:0000256|ARBA:ARBA00009154,
CC ECO:0000256|RuleBase:RU368003}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PKK26241.1}.
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DR EMBL; AKCR02000027; PKK26240.1; -; Genomic_DNA.
DR EMBL; AKCR02000027; PKK26241.1; -; Genomic_DNA.
DR RefSeq; XP_005505423.1; XM_005505366.1.
DR RefSeq; XP_005505424.1; XM_005505367.1.
DR AlphaFoldDB; A0A2I0M985; -.
DR OrthoDB; 73913at2759; -.
DR Proteomes; UP000053872; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR InterPro; IPR011082; Exosome-assoc_fac/DNA_repair.
DR InterPro; IPR007146; Sas10/Utp3/C1D.
DR PANTHER; PTHR15341:SF3; NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D; 1.
DR PANTHER; PTHR15341; SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR; 1.
DR Pfam; PF04000; Sas10_Utp3; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|RuleBase:RU368003};
KW DNA-binding {ECO:0000256|RuleBase:RU368003};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU368003};
KW Receptor {ECO:0000313|EMBL:PKK26241.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000053872};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU368003};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552,
KW ECO:0000256|RuleBase:RU368003}.
FT REGION 123..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 148 AA; 17084 MW; D080C2AC35C2A5AA CRC64;
MEMSEDDINM EEYPTEIHDY LAAFEKSLGS VDEMLKTMMS VSRSELLQKL DPLEQAKLDL
VSVYTLNSMF WVYLATQGIN PKEHPVKQEL ERIRTYMNKV KEIADKKKAS KLNKGAASRF
VRNALWEPNT ENEHSSKTPA KGKKRKTD
//
