ID A0A2I0MG76_COLLI Unreviewed; 862 AA.
AC A0A2I0MG76;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE SubName: Full=PRP40 pre-mRNA processing factor 40 homolog A, transcript variant X3 {ECO:0000313|EMBL:PKK28674.1};
GN Name=PRPF40A {ECO:0000313|EMBL:PKK28674.1};
GN ORFNames=A306_00006732 {ECO:0000313|EMBL:PKK28674.1};
OS Columba livia (Rock dove).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba.
OX NCBI_TaxID=8932 {ECO:0000313|EMBL:PKK28674.1, ECO:0000313|Proteomes:UP000053872};
RN [1] {ECO:0000313|EMBL:PKK28674.1, ECO:0000313|Proteomes:UP000053872}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Blood {ECO:0000313|EMBL:PKK28674.1};
RX PubMed=23371554; DOI=10.1126/science.1230422;
RA Shapiro M.D., Kronenberg Z., Li C., Domyan E.T., Pan H., Campbell M.,
RA Tan H., Huff C.D., Hu H., Vickrey A.I., Nielsen S.C., Stringham S.A.,
RA Hu H., Willerslev E., Gilbert M.T., Yandell M., Zhang G., Wang J.;
RT "Genomic diversity and evolution of the head crest in the rock pigeon.";
RL Science 339:1063-1067(2013).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PKK28674.1}.
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DR EMBL; AKCR02000014; PKK28674.1; -; Genomic_DNA.
DR RefSeq; XP_013224794.1; XM_013369340.1.
DR AlphaFoldDB; A0A2I0MG76; -.
DR GeneID; 102085662; -.
DR CTD; 55660; -.
DR OrthoDB; 25674at2759; -.
DR Proteomes; UP000053872; Unassembled WGS sequence.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR CDD; cd00201; WW; 2.
DR Gene3D; 2.20.70.10; -; 2.
DR Gene3D; 1.10.10.440; FF domain; 5.
DR InterPro; IPR002713; FF_domain.
DR InterPro; IPR036517; FF_domain_sf.
DR InterPro; IPR039726; Prp40-like.
DR InterPro; IPR001202; WW_dom.
DR InterPro; IPR036020; WW_dom_sf.
DR PANTHER; PTHR11864:SF20; PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A; 1.
DR PANTHER; PTHR11864; PRE-MRNA-PROCESSING PROTEIN PRP40; 1.
DR Pfam; PF01846; FF; 4.
DR Pfam; PF00397; WW; 2.
DR SMART; SM00441; FF; 5.
DR SMART; SM00456; WW; 2.
DR SUPFAM; SSF81698; FF domain; 5.
DR SUPFAM; SSF51045; WW domain; 2.
DR PROSITE; PS51676; FF; 6.
DR PROSITE; PS01159; WW_DOMAIN_1; 2.
DR PROSITE; PS50020; WW_DOMAIN_2; 2.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000053872}.
FT DOMAIN 115..148
FT /note="WW"
FT /evidence="ECO:0000259|PROSITE:PS50020"
FT DOMAIN 161..189
FT /note="WW"
FT /evidence="ECO:0000259|PROSITE:PS50020"
FT DOMAIN 295..349
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 362..416
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 429..489
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 509..573
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 578..633
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 648..705
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 103..133
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 165..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 709..862
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 348..375
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 480..512
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 9..29
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 182..205
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 270..294
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 713..733
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 734..772
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 773..787
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 788..817
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 842..862
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 862 AA; 98949 MW; 0E007B653D1F3BCA CRC64;
MGHPGMPHYP PMGMHPMGQR PPNMPPVPHG MMPQMMPPMG GPPMGQMPGM MQSVMPGMMM
SHMSQAAMQP TVPPGVNSMD AQVGVTPPGT QTTHPVVCAA QQTATTNSSA TEDHSKQKST
WTEHKSPDGR TYYYNTETKQ STWEKPDDLK TPAEQLLSKC PWKEYKSDSG KPYYYNSQTK
ESRWAKPKEL EDLEAMIKAE ENSIKPEEST PATTAAPEAE SAAAASGTET EATGATAAEE
PGQATAAPAA QEQSGEAAAG AADDSSKQEA AADAASKKED DDAQPVKKTY TWNTKEEAKQ
AFKELLKEKR VPSNASWEQA MKMIINDPRY SALAKLSEKK QAFNAYKVQT EKEEKEEARS
KYKEAKESFQ RFLENHEKMT STTRYKKAEQ MFGEMEVWNA ISERDRLEIY EDVLFFLSKK
EKEQAKQLRK RNWEALKNIL DNMANVTYCT TWSEAQQYLM DNPTFAEDEE LQNMDKEDAL
ICFEEHIRAL EKEEEEEKQK SLLRERRRQR KNRESFQLFL DELHEHGQLH SMSSWMELYP
TISSDIRFTN MLGQPVFSSG STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT
SFEDFVTVIS STKRATTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML
KQATPPIELD AVWEDIRDRF VKEPAFEDIT LESERKRIFK DFMHVLEHEC QHHHSKNKKH
SKKSKKHHRK RSRSRSGSES EDDDSHSKKK RQRSESRSVS ERSSSAESER SYKKSKKHKK
KSKKRRHKSD SPESDIEREK DKKDRESEKD RARQRSESKH KSPTKKRPGK DSGNWDTSGS
ELSEGELEKQ RRTLLEQLDE DQ
//
