ID A0A2I0V7Q8_9ASPA Unreviewed; 1010 AA.
AC A0A2I0V7Q8;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE SubName: Full=Putative ubiquitin conjugation factor E4 {ECO:0000313|EMBL:PKU59445.1};
GN Name=PUB1 {ECO:0000313|EMBL:PKU59445.1};
GN ORFNames=MA16_Dca012773 {ECO:0000313|EMBL:PKU59445.1};
OS Dendrobium catenatum.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
OC Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
OX NCBI_TaxID=906689 {ECO:0000313|EMBL:PKU59445.1, ECO:0000313|Proteomes:UP000233837};
RN [1] {ECO:0000313|EMBL:PKU59445.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU59445.1};
RX PubMed=26754549; DOI=10.1038/srep19029;
RA Zhang G.Q., Xu Q., Bian C., Tsai W.C., Yeh C.M., Liu K.W., Yoshida K.,
RA Zhang L.S., Chang S.B., Chen F., Shi Y., Su Y.Y., Zhang Y.Q., Chen L.J.,
RA Yin Y., Lin M., Huang H., Deng H., Wang Z.W., Zhu S.L., Zhao X., Deng C.,
RA Niu S.C., Huang J., Wang M., Liu G.H., Yang H.J., Xiao X.J., Hsiao Y.Y.,
RA Wu W.L., Chen Y.Y., Mitsuda N., Ohme-Takagi M., Luo Y.B., Van de Peer Y.,
RA Liu Z.J.;
RT "The Dendrobium catenatum Lindl. genome sequence provides insights into
RT polysaccharide synthase, floral development and adaptive evolution.";
RL Sci. Rep. 6:19029-19029(2016).
RN [2] {ECO:0000313|EMBL:PKU59445.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU59445.1};
RX PubMed=28902843; DOI=10.1038/nature23897;
RA Zhang G.Q., Liu K.W., Li Z., Lohaus R., Hsiao Y.Y., Niu S.C., Wang J.Y.,
RA Lin Y.C., Xu Q., Chen L.J., Yoshida K., Fujiwara S., Wang Z.W., Zhang Y.Q.,
RA Mitsuda N., Wang M., Liu G.H., Pecoraro L., Huang H.X., Xiao X.J., Lin M.,
RA Wu X.Y., Wu W.L., Chen Y.Y., Chang S.B., Sakamoto S., Ohme-Takagi M.,
RA Yagi M., Zeng S.J., Shen C.Y., Yeh C.M., Luo Y.B., Tsai W.C.,
RA Van de Peer Y., Liu Z.J.;
RT "The Apostasia genome and the evolution of orchids.";
RL Nature 549:379-383(2017).
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: Belongs to the ubiquitin conjugation factor E4 family.
CC {ECO:0000256|ARBA:ARBA00007434}.
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DR EMBL; KZ504112; PKU59445.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2I0V7Q8; -.
DR STRING; 906689.A0A2I0V7Q8; -.
DR OrthoDB; 1554at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000233837; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
DR GO; GO:0034450; F:ubiquitin-ubiquitin ligase activity; IEA:InterPro.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; IEA:InterPro.
DR CDD; cd16657; RING-Ubox_UBE4A; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR019474; Ub_conjug_fac_E4_core.
DR InterPro; IPR045132; UBE4.
DR InterPro; IPR003613; Ubox_domain.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR13931:SF2; UBIQUITIN CONJUGATION FACTOR E4 B; 1.
DR PANTHER; PTHR13931; UBIQUITINATION FACTOR E4; 1.
DR Pfam; PF04564; U-box; 1.
DR Pfam; PF10408; Ufd2P_core; 1.
DR SMART; SM00504; Ubox; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51698; U_BOX; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000233837}.
FT DOMAIN 933..1007
FT /note="U-box"
FT /evidence="ECO:0000259|PROSITE:PS51698"
FT REGION 426..456
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 512..539
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 429..456
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1010 AA; 114347 MW; 85BF2F69828D7FF5 CRC64;
MSTAKPQRSL AEIEDIILRK IFLVSLSRPT QNEPKIAYLE MTAAEILSEG KPLLLSRETM
ERVLIDRLSG DFPAADTPFF YLVGCFRRAG DEIRKVASMK DPSVRSEIES AIKQAKRLFV
SYCRIHVGNP DMFAAGKPAA SELLDLIFSE VASPMDGVNS LGSGISCPPG FLDEFFSEGD
AESLGPVMNE VYELLRATVE RVSALGNFQQ PLRALQLLVR YPECAKALVN HPNWIPNQSY
FFMGDGRVME FKSILGAFLH VSALPDYKDF KSTPDVGQQC FSESSTRRPA DLSSSFTTIR
TVMNILYDGL GEVILTLLKN IDTRDKVLDY IAAMIVKNSA RSGMQVNPLS CASSGSFVNL
SAVMLRLSEP FLDANASKRD KIDPKYVFFN NRVDLRQLTA IHASSEEVVS FMENLKRIEE
EEKGENRVLQ SFEASTSGNS SGSYASPSTN VTKSSTGKNK YSFICECFFM TARVLNLGLM
KALSDFKRIV QELARFEEDL STFREMREQG ASPQLENDIS RLEKAVEKLS QEKFCYEAQI
LRDGALLQQA LSFNRLVVIW LVSLVGGFKM PLPRECPMVF ACMPEHFIED AMDLLVLTSR
IPKALDGFLL EDFLNFIIMF MASPSYVKNP YLRAKMVEVL NCWMPQRSGV SSTASLFEGH
TLSLDYLLRN LLKVYVDIEF TGSHNQFFDK FRIRHNIAEL LEYLWNVPSH RNAWRKIAKE
EEKGVYLNFL NFLINDSIYL LDESLNKILE LKEIEAEMSN SIEWERRPAQ EREERMRQFH
SQENIIRFDM KLANEDVGML AFTSEQIPSP FLLPEMVERV ASMLNYFLLQ LVGPKRKSLI
VKDPEKYEFR PKQLLKQIAE IYVHIARGDH ENVFPAALSM DGRAYNGNLF TAAADILWKI
GEDSKVIKEF VHLGEKAKAA ASEAMDAEAA LGDIPEEFLD PIQYTLMNDP VILPSSKVTI
DRPVIQRHLL SDNTDPFNRS HLTQDMLIPN VELKARIEGF IKSQGSRNQS
//
