ID A0A2I0VF51_9ASPA Unreviewed; 2181 AA.
AC A0A2I0VF51;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE SubName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic {ECO:0000313|EMBL:PKU62051.1};
GN Name=ISE2 {ECO:0000313|EMBL:PKU62051.1};
GN ORFNames=MA16_Dca012160 {ECO:0000313|EMBL:PKU62051.1};
OS Dendrobium catenatum.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
OC Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
OX NCBI_TaxID=906689 {ECO:0000313|EMBL:PKU62051.1, ECO:0000313|Proteomes:UP000233837};
RN [1] {ECO:0000313|EMBL:PKU62051.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU62051.1};
RX PubMed=26754549; DOI=10.1038/srep19029;
RA Zhang G.Q., Xu Q., Bian C., Tsai W.C., Yeh C.M., Liu K.W., Yoshida K.,
RA Zhang L.S., Chang S.B., Chen F., Shi Y., Su Y.Y., Zhang Y.Q., Chen L.J.,
RA Yin Y., Lin M., Huang H., Deng H., Wang Z.W., Zhu S.L., Zhao X., Deng C.,
RA Niu S.C., Huang J., Wang M., Liu G.H., Yang H.J., Xiao X.J., Hsiao Y.Y.,
RA Wu W.L., Chen Y.Y., Mitsuda N., Ohme-Takagi M., Luo Y.B., Van de Peer Y.,
RA Liu Z.J.;
RT "The Dendrobium catenatum Lindl. genome sequence provides insights into
RT polysaccharide synthase, floral development and adaptive evolution.";
RL Sci. Rep. 6:19029-19029(2016).
RN [2] {ECO:0000313|EMBL:PKU62051.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU62051.1};
RX PubMed=28902843; DOI=10.1038/nature23897;
RA Zhang G.Q., Liu K.W., Li Z., Lohaus R., Hsiao Y.Y., Niu S.C., Wang J.Y.,
RA Lin Y.C., Xu Q., Chen L.J., Yoshida K., Fujiwara S., Wang Z.W., Zhang Y.Q.,
RA Mitsuda N., Wang M., Liu G.H., Pecoraro L., Huang H.X., Xiao X.J., Lin M.,
RA Wu X.Y., Wu W.L., Chen Y.Y., Chang S.B., Sakamoto S., Ohme-Takagi M.,
RA Yagi M., Zeng S.J., Shen C.Y., Yeh C.M., Luo Y.B., Tsai W.C.,
RA Van de Peer Y., Liu Z.J.;
RT "The Apostasia genome and the evolution of orchids.";
RL Nature 549:379-383(2017).
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DR EMBL; KZ503706; PKU62051.1; -; Genomic_DNA.
DR STRING; 906689.A0A2I0VF51; -.
DR OrthoDB; 208079at2759; -.
DR Proteomes; UP000233837; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0006261; P:DNA-templated DNA replication; IEA:InterPro.
DR GO; GO:0050896; P:response to stimulus; IEA:UniProt.
DR CDD; cd18026; DEXHc_POLQ-like; 1.
DR CDD; cd08638; DNA_pol_A_theta; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.20; -; 1.
DR Gene3D; 3.30.70.370; -; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR001098; DNA-dir_DNA_pol_A_palm_dom.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR002298; DNA_polymerase_A.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR046931; HTH_61.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR048960; POLQ-like_helical.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR10133; DNA POLYMERASE I; 1.
DR PANTHER; PTHR10133:SF62; DNA POLYMERASE THETA; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00476; DNA_pol_A; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF20470; HTH_61; 1.
DR Pfam; PF21099; POLQ_helical; 1.
DR PRINTS; PR00868; DNAPOLI.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00482; POLAc; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF158702; Sec63 N-terminal domain-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000313|EMBL:PKU62051.1};
KW Hydrolase {ECO:0000313|EMBL:PKU62051.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000233837}.
FT DOMAIN 541..733
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 773..965
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..66
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1121..1140
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 51..65
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2181 AA; 241484 MW; E4D07117D77DC6A8 CRC64;
MMSSGSPRAR INQFFASKKK QSEKGPKTSF SGSPKGTLVR YLVKSPDANT HPDPENASSR
PGSVKRNLTL EIGLGSDIAK KCSLPSLEST GDSRKDEGLC NDKKRAHFET LIARDVISAD
APSKEEGGSE SGGGNLELKK FANDFLSLYC SDLQSALPET SEARGKKRDG SSFFLSTCSK
KQCITDTFDG RPDTSNNASE ESGCNDLKEI NMADTSHVSS IRCSKTPDLT LIKSGLTALA
SSVGTPKSAS RSSRLSPGEE FWNEAIQVAD GLIVPVERLL ANSLVSTSDG SLKTFVKDAL
SCVAHQNSEY ISKLEIVKEE AQNGVGISFM KPNELITEEI KMPPAVIQKN EVSPLPIRHF
DFIHEENDTN KNFDKGFLDR ANSVSNAGAG LIVGDFINDK KLHDKSCESE AYRKAFDTNQ
NPSNAHLLDG KLHKPVPDAS NSVGITGKSV SLGQVNGANP SCNDLSSIRS ISALQERIDA
EMLETRSNAQ AYHEENNTPA SSVPLRDYLQ LSSWLPSELV GVYSKKGITK LYPWQVDCLR
VDGVLERRNL VYCASTSAGK SFVAEILMLR RVIATGKMAL LVLPYVSICA EKAEHLELLL
QPLGKHVRSF YGNQGGGSLP KDTSVAVCTI EKANSLINRL LEEGRLSEVG IIVIDELHMV
GDQHRGYLLE LMLTKLRYAA GEGISESCSE EGSTTSSGKT DVACGLQIVG MSATMPNLAA
VADWLQAALY QTNFRPVPLE EFIKVGNTIF NKKMDAVRVL PKTADLGGKD PDHIVELCNE
VVQEGQSVLL FCSSRKGCEI TARHISMFLK GYSISMRVVD CEYKDYSSAV EALRRCPSGL
DPILEETLPS GVAYHHAGLT VEEREIIEMC YRKGIVRVLT ATSTLAAGVN LPARRVIFRQ
PRIGRDFIDG TRYRQMAGRA GRTGIDTKGE SILICKHDET KKVSAILNDS CPPLQSCLSE
EKNGMTHAIM EVVSGGIVQS ASDIHRYVRC TLLNSTRPFE DVVASAQDSL RWLCRKKFLE
WNEETGLYSS TPLGRASFGS SLSPEESLVV LNDLSRAREG FVLASDLHLV YLVTPINVEV
EPDWELYYQR FMELSPLDQS VGNRVGVVEP FLMRMAHGAP MPVQDRSKGK KRSPKGNLNA
RSATNVSDLL SNEQSLRIAR RFFVALMLSR LVQEVPVSDV CEAFKVARGM IQALQENAGR
FASMVSLFCE RLGWHDLEGL VAKFQNRVSF GVRAEIVELT TIPYVKGSRA RALYKAGLRT
PLSIAEASIS DIANALFESS SWSGQEGLAK KRIRMGVAKK IKNASRKILL DKAEEASVAA
FSAFKSLGIN IPQISRPMLS KIAESFEHGS TTSKSAESLF DRSTSQDRKA TRYPAEDNKI
MVLDNSSEEI VVQKLSKKKD GTMLTTGEMR HNHNMDKALV KFNSDQLLDN LVKPMGASSP
TLGPANEVHI VKHDSDNKEK DMEQTLTIHS NARRFDKGPS CASTFPGGFD SFLEQWDLKR
EFYFDLHYSK LPDQNSSLRF EVFGLAICWE NSPIYYVNFL RDFLPCKMES SYHDELTNRE
GGIIKNLASF DIWSFAKSRW EKLGKIVSKN GSRKLCWNLK TQIQVLKFPC ISLQRFNRLG
LELKMLNDTE LIGSSYILLP TISVHDGIDL CLMTWSLWPD DESKSAPSLE KLAKKRLSSQ
AAAAANQDGK WRNQMRKAAH DGCCRRVAQI RALSSVVWKL VVSENLVNVL SRIENPMVKV
LADMELWGVG VDMEACLRAR HVLMRKLKEL EKDAHNLAGM PFSLYSTADI AHVLYTRLKL
PIPNNSKKGK LHPSTNKHSL DLLRGQHPII SVIKEHRTLA KLLNCTLGSI CSRARLCGNS
QKYILQGRWL QTSTATGRLS MEEPNLQCVE HMVIFTTHDP DAKNLCSSDI DHHQINPRDF
VIPTQENWLL LTADYSQIEL RLMAHFSKDS SLVELLRKPD GDCFTMIAAR WTGKMESSIS
SLEREHTKRL VYGILYGMGP NSLAEQLECS PREADEKIHN FKASFPGVSA WLNAAVASCC
DKGYVETLMG RKRFLSKINF GNNKEKTKAQ RQAVNSICQG SAADVIKVAM IKIHTTIVEG
IYLPDADSRF EVQFSVLRGQ CRIILQVHDE LVLEVDPRFV REAAILLQTS MEGAASLSVP
LRVKMKIGRT WGTQEPFLLD S
//
