ID A0A2I0VT34_9ASPA Unreviewed; 855 AA.
AC A0A2I0VT34;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 22-FEB-2023, entry version 20.
DE SubName: Full=Zinc finger CCCH domain-containing protein 22 {ECO:0000313|EMBL:PKU66563.1};
GN ORFNames=MA16_Dca006891 {ECO:0000313|EMBL:PKU66563.1};
OS Dendrobium catenatum.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
OC Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
OX NCBI_TaxID=906689 {ECO:0000313|EMBL:PKU66563.1, ECO:0000313|Proteomes:UP000233837};
RN [1] {ECO:0000313|EMBL:PKU66563.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU66563.1};
RX PubMed=26754549; DOI=10.1038/srep19029;
RA Zhang G.Q., Xu Q., Bian C., Tsai W.C., Yeh C.M., Liu K.W., Yoshida K.,
RA Zhang L.S., Chang S.B., Chen F., Shi Y., Su Y.Y., Zhang Y.Q., Chen L.J.,
RA Yin Y., Lin M., Huang H., Deng H., Wang Z.W., Zhu S.L., Zhao X., Deng C.,
RA Niu S.C., Huang J., Wang M., Liu G.H., Yang H.J., Xiao X.J., Hsiao Y.Y.,
RA Wu W.L., Chen Y.Y., Mitsuda N., Ohme-Takagi M., Luo Y.B., Van de Peer Y.,
RA Liu Z.J.;
RT "The Dendrobium catenatum Lindl. genome sequence provides insights into
RT polysaccharide synthase, floral development and adaptive evolution.";
RL Sci. Rep. 6:19029-19029(2016).
RN [2] {ECO:0000313|EMBL:PKU66563.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU66563.1};
RX PubMed=28902843; DOI=10.1038/nature23897;
RA Zhang G.Q., Liu K.W., Li Z., Lohaus R., Hsiao Y.Y., Niu S.C., Wang J.Y.,
RA Lin Y.C., Xu Q., Chen L.J., Yoshida K., Fujiwara S., Wang Z.W., Zhang Y.Q.,
RA Mitsuda N., Wang M., Liu G.H., Pecoraro L., Huang H.X., Xiao X.J., Lin M.,
RA Wu X.Y., Wu W.L., Chen Y.Y., Chang S.B., Sakamoto S., Ohme-Takagi M.,
RA Yagi M., Zeng S.J., Shen C.Y., Yeh C.M., Luo Y.B., Tsai W.C.,
RA Van de Peer Y., Liu Z.J.;
RT "The Apostasia genome and the evolution of orchids.";
RL Nature 549:379-383(2017).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PIRNR:PIRNR017706}.
CC -!- SIMILARITY: Belongs to the TFP11/STIP family.
CC {ECO:0000256|ARBA:ARBA00010900, ECO:0000256|PIRNR:PIRNR017706}.
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DR EMBL; KZ503267; PKU66563.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2I0VT34; -.
DR STRING; 906689.A0A2I0VT34; -.
DR OrthoDB; 3060898at2759; -.
DR Proteomes; UP000233837; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000390; P:spliceosomal complex disassembly; IEA:InterPro.
DR InterPro; IPR000467; G_patch_dom.
DR InterPro; IPR022783; GCFC_dom.
DR InterPro; IPR022159; STIP/TFIP11_N.
DR InterPro; IPR024933; TFP11.
DR InterPro; IPR045211; TFP11/STIP/Ntr1.
DR PANTHER; PTHR23329:SF1; TUFTELIN-INTERACTING PROTEIN 11; 1.
DR PANTHER; PTHR23329; TUFTELIN-INTERACTING PROTEIN 11-RELATED; 1.
DR Pfam; PF01585; G-patch; 1.
DR Pfam; PF07842; GCFC; 1.
DR Pfam; PF12457; TIP_N; 1.
DR PIRSF; PIRSF017706; TFIP11; 1.
DR SMART; SM00443; G_patch; 1.
DR PROSITE; PS50174; G_PATCH; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664,
KW ECO:0000256|PIRNR:PIRNR017706};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187,
KW ECO:0000256|PIRNR:PIRNR017706};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PIRNR:PIRNR017706};
KW Reference proteome {ECO:0000313|Proteomes:UP000233837};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728, ECO:0000256|PIRNR:PIRNR017706}.
FT DOMAIN 187..233
FT /note="G-patch"
FT /evidence="ECO:0000259|PROSITE:PS50174"
FT REGION 49..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 305..387
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 79..108
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 122..179
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 855 AA; 97554 MW; AA142CF1C9B2E9D0 CRC64;
MDEDQEMERF DMENDYDGGR WIGDEYYYRS KREKRTQTKE DTIYGSFAAA SSDSDSDGRV
SRKRSKRGLI RKPDLSKPVQ FISTGTVMPN QEVERNAEES TASENHNPSA GLGFGLGFRV
DPDKTGEGDE DENFLPTAFG RKIKEAAQRR EREREEMERE KLRSEKKSIG RRETGSSKEL
GKFESHTRGI GLKLMEKMGY KVGTGLGKSE QGITVPIEAK LRPKGMGMGF NDYEEAKLPA
LDEAVNEGKA TPTVTTSRPK EKRWLKQKQG KKKVEFMTAD ELLAKKQEQG LDVFQQKILD
MRGPQARVLS NLENLNAEVE AKENQVPMPE LQHNVRLIVD MAESDILKID NQLRRERENV
VSLQKEKEKL QKEAARQKRQ LEAMETIAKM VKQVEEDSLS GILTLESLLR TFSDLKERFA
EDYKLFNISC IACSFAIPQL IRVFQGWEPL QNPLHGLTVM SSWRDLLQGD QPFDYSDDVV
NTSPYAHLVG EVILPAVRIS GTNSWQARDP EPMLRFVESW EKLLPPIILQ SILEHVIMPK
LSTAVDSWDP RRETVPIHVW IHPWLPLLGQ RLEDLYHKIR FKLGNVLHAW HASDASAYAI
LSPWKDVFDA ASWENLIVRF IVPKLMSALQ EFQINPANQT LDQFNWVMTW ASVIPIQHVV
NMLEVGFFSK WQQVLFHWLC SNPDFNEVMQ WYMGWKGLFP PELLANERIR LLFNSGLSMM
NQASEGMELV QPGARENASY LRVTERRQFE VQHTAGYSVH LHTSSASANG FPRDGGGADP
EMSLKEIVED YAVEQGLIFV PKVGRSHNGL PVYGFGNISI CIDSVKEVLY AQGLDGWDVV
SLNQLIQMQH ASKHR
//
