ID A0A2I0X1R4_9ASPA Unreviewed; 508 AA.
AC A0A2I0X1R4;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=F-box protein SKIP19 {ECO:0000313|EMBL:PKU81854.1};
GN Name=SKIP19 {ECO:0000313|EMBL:PKU81854.1};
GN ORFNames=MA16_Dca003870 {ECO:0000313|EMBL:PKU81854.1};
OS Dendrobium catenatum.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
OC Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
OX NCBI_TaxID=906689 {ECO:0000313|EMBL:PKU81854.1, ECO:0000313|Proteomes:UP000233837};
RN [1] {ECO:0000313|EMBL:PKU81854.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU81854.1};
RX PubMed=26754549; DOI=10.1038/srep19029;
RA Zhang G.Q., Xu Q., Bian C., Tsai W.C., Yeh C.M., Liu K.W., Yoshida K.,
RA Zhang L.S., Chang S.B., Chen F., Shi Y., Su Y.Y., Zhang Y.Q., Chen L.J.,
RA Yin Y., Lin M., Huang H., Deng H., Wang Z.W., Zhu S.L., Zhao X., Deng C.,
RA Niu S.C., Huang J., Wang M., Liu G.H., Yang H.J., Xiao X.J., Hsiao Y.Y.,
RA Wu W.L., Chen Y.Y., Mitsuda N., Ohme-Takagi M., Luo Y.B., Van de Peer Y.,
RA Liu Z.J.;
RT "The Dendrobium catenatum Lindl. genome sequence provides insights into
RT polysaccharide synthase, floral development and adaptive evolution.";
RL Sci. Rep. 6:19029-19029(2016).
RN [2] {ECO:0000313|EMBL:PKU81854.1, ECO:0000313|Proteomes:UP000233837}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=The whole plant {ECO:0000313|EMBL:PKU81854.1};
RX PubMed=28902843; DOI=10.1038/nature23897;
RA Zhang G.Q., Liu K.W., Li Z., Lohaus R., Hsiao Y.Y., Niu S.C., Wang J.Y.,
RA Lin Y.C., Xu Q., Chen L.J., Yoshida K., Fujiwara S., Wang Z.W., Zhang Y.Q.,
RA Mitsuda N., Wang M., Liu G.H., Pecoraro L., Huang H.X., Xiao X.J., Lin M.,
RA Wu X.Y., Wu W.L., Chen Y.Y., Chang S.B., Sakamoto S., Ohme-Takagi M.,
RA Yagi M., Zeng S.J., Shen C.Y., Yeh C.M., Luo Y.B., Tsai W.C.,
RA Van de Peer Y., Liu Z.J.;
RT "The Apostasia genome and the evolution of orchids.";
RL Nature 549:379-383(2017).
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DR EMBL; KZ502211; PKU81854.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2I0X1R4; -.
DR OrthoDB; 407666at2759; -.
DR Proteomes; UP000233837; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd04458; CSP_CDS; 1.
DR CDD; cd22164; F-box_AtSKIP19-like; 1.
DR Gene3D; 1.20.1280.50; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR011129; CSD.
DR InterPro; IPR002059; CSP_DNA-bd.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR38926; F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED; 1.
DR PANTHER; PTHR38926:SF2; F-BOX_LRR-REPEAT PROTEIN 21-RELATED; 1.
DR Pfam; PF00313; CSD; 1.
DR Pfam; PF12937; F-box-like; 1.
DR Pfam; PF00098; zf-CCHC; 2.
DR PRINTS; PR00050; COLDSHOCK.
DR SMART; SM00357; CSP; 1.
DR SMART; SM00343; ZnF_C2HC; 2.
DR SUPFAM; SSF81383; F-box domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF52047; RNI-like; 1.
DR PROSITE; PS51857; CSD_2; 1.
DR PROSITE; PS50181; FBOX; 1.
DR PROSITE; PS50158; ZF_CCHC; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}; Reference proteome {ECO:0000313|Proteomes:UP000233837};
KW Zinc {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 7..73
FT /note="CSD"
FT /evidence="ECO:0000259|PROSITE:PS51857"
FT DOMAIN 89..102
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 108..122
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 198..245
FT /note="F-box"
FT /evidence="ECO:0000259|PROSITE:PS50181"
FT REGION 168..196
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 171..188
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 508 AA; 57547 MW; 26B53B4D2FABE5E1 CRC64;
MASSIETCKG TVAWFDVRRG FGFITPEDGG ENLFVHNSSI KAMGYRSLVV GNAVEFVVSV
GDDGRKRAVS VTGPGGAYIK GRRYFGGACY RCGEIGHMAM DCGRLGPCYT CGVMGHLARD
CPATRVEPSS PRPNLLKPSN LDSISPHSLP MVLPFDLLKE GIRTLSDQFS ENSDSEEEEE
DDDEINDEDK EFPRGAEERN WAELPCDVLF VIFKKIAALE IIRSAQFVCR MWRHLSHEPD
LWRCIQIKVP GEDLDMNVAK SMVLIAVDRS KGCMEEFYME EFYVECFGGE GDELLSYISD
RATKLRRLRL ISINSMSEME LAQAVRKFSL LEDFEISFCS FSAEVIELVG LACPQLKSFR
LNAESYKDRY DYYGDSHENF DAEAFAIATH MQKLQRLQLI GNSLTNTGLI AILNSCPNLQ
YLDIRACFNV NVDESLKEKC AKIKESRLPQ DSTADYEFND LIVSHEAFDT DFDPTLSDTE
YDFYFDDSSY YHYDGYSDMS YDDLFEFC
//
