ID A0A2I4DSF8_JUGRE Unreviewed; 570 AA.
AC A0A2I4DSF8;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 02-DEC-2020, sequence version 2.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=Ubiquitin fusion degradation protein 1 {ECO:0000313|RefSeq:XP_018810077.2};
GN Name=LOC108983016 {ECO:0000313|RefSeq:XP_018810077.2};
GN ORFNames=F2P56_001720 {ECO:0000313|EMBL:KAF5481025.1};
OS Juglans regia (English walnut).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fagales; Juglandaceae; Juglans.
OX NCBI_TaxID=51240 {ECO:0000313|Proteomes:UP000235220, ECO:0000313|RefSeq:XP_018810077.2};
RN [1] {ECO:0000313|EMBL:KAF5481025.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:KAF5481025.1};
RA Martinez-Garcia P.J., Crepeau M.W., Puiu D., Gonzalez-Ibeas D., Whalen J.,
RA Stevens K., Paul R., Butterfield T., Britton M., Reagan R., Chakraborty S.,
RA Walawage S.L., Vasquez-Gross H.A., Cardeno C., Famula R., Pratt K.,
RA Kuruganti S., Aradhya M.K., Leslie C.A., Dandekar A.M., Salzberg S.L.,
RA Wegrzyn J.L., Langley C.H., Neale D.B.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KAF5481025.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:KAF5481025.1};
RA Marrano A., Britton M., Zimin A.V., Zaini P.A., Workman R., Puiu D.,
RA Bianco L., Allen B.J., Troggio M., Leslie C.A., Timp W., Dendekar A.,
RA Salzberg S.L., Neale D.B.;
RT "Walnut 2.0.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|RefSeq:XP_018810077.2}
RP IDENTIFICATION.
RC TISSUE=Leaves {ECO:0000313|RefSeq:XP_018810077.2};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the UFD1 family.
CC {ECO:0000256|ARBA:ARBA00006043}.
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DR EMBL; LIHL02000001; KAF5481025.1; -; Genomic_DNA.
DR RefSeq; XP_018810077.2; XM_018954532.2.
DR STRING; 51240.A0A2I4DSF8; -.
DR EnsemblPlants; Jr01_18590_p1; cds.Jr01_18590_p1; Jr01_18590.
DR Gramene; Jr01_18590_p1; cds.Jr01_18590_p1; Jr01_18590.
DR KEGG; jre:108983016; -.
DR OrthoDB; 1333844at2759; -.
DR Proteomes; UP000235220; Chromosome 1.
DR Proteomes; UP000619265; Unassembled WGS sequence.
DR GO; GO:0034098; C:VCP-NPL4-UFD1 AAA ATPase complex; IBA:GO_Central.
DR GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central.
DR GO; GO:0071712; P:ER-associated misfolded protein catabolic process; IBA:GO_Central.
DR GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; IBA:GO_Central.
DR Gene3D; 2.60.120.380; -; 1.
DR Gene3D; 3.10.330.10; -; 1.
DR Gene3D; 2.40.40.50; Ubiquitin fusion degradation protein UFD1, N-terminal domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR049439; TRAFD1-XIAF1_Znf.
DR InterPro; IPR004854; Ufd1-like.
DR InterPro; IPR042299; Ufd1-like_Nn.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12555; UBIQUITIN FUSION DEGRADATON PROTEIN 1; 1.
DR PANTHER; PTHR12555:SF13; UBIQUITIN RECOGNITION FACTOR IN ER-ASSOCIATED DEGRADATION PROTEIN 1; 1.
DR Pfam; PF21366; TRAFD1-XIAF1_ZnF; 1.
DR Pfam; PF03152; UFD1; 1.
DR SUPFAM; SSF49599; TRAF domain-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000235220};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT DOMAIN 533..562
FT /note="TRAFD1/XAF1 zinc finger"
FT /evidence="ECO:0000259|Pfam:PF21366"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 570 AA; 63854 MW; 6EF93E920D0CC2DA CRC64;
MDFELRRARE KLEKEQKERK EKAKVKLDRE RKGKEEAKRQ REAIEAAQRS RRLDAAEAQL
KADQQMQENV LAGRGIMFYR LLEAVPYQGI GDKIKLPPSC FTELSDQGAF DKGPMYFQLS
VVHQEVSSDT HATDDENLRN THSGVLEFTA DEGSVALPPH VWHNLFPGET QKTSLIEVRY
VWLPKGTYAK LQPERIGFSD LPNHKAILET SLRQHATLSQ GDILTVNYGE LAYKLQVLEL
KPSSSISVLE TDIEVDIVGS DSASERTDQH VLNPLVLGNS ESGIIGEGNY MYYKFSIDND
TLGRIATGDA RIEVKIEAET DGGDTDLYIS RHPLIFPTRH QHEWSSHDIG SKTLILSSKD
ENLGAGTYSV GVYGFKGTSK YNISASVQDD YKLKVGQQAV SSASPMEMDT VECRNCKHYI
PSRTIALHEA YCSRHNIVCR HAGCGVVLRV EEAKNHVHCD KCGQAFQQGE MEKHMKVFHE
PLHCPCGIVL EKEQMVEHQT SVCPLRLISC RFCGDMVQAG NSAVDVRDRL RGLSEHESIC
GSRTAPCDSC GRSVMLKDMD IHQIAVHQKS
//
