ID A0A2I4F4B5_JUGRE Unreviewed; 374 AA.
AC A0A2I4F4B5;
DT 28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT 28-FEB-2018, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE SubName: Full=Splicing factor 3B subunit 4-like {ECO:0000313|RefSeq:XP_018826495.1};
GN Name=LOC108995376 {ECO:0000313|RefSeq:XP_018826495.1};
GN ORFNames=F2P56_014078 {ECO:0000313|EMBL:KAF5463959.1};
OS Juglans regia (English walnut).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fagales; Juglandaceae; Juglans.
OX NCBI_TaxID=51240 {ECO:0000313|Proteomes:UP000235220, ECO:0000313|RefSeq:XP_018826495.1};
RN [1] {ECO:0000313|EMBL:KAF5463959.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:KAF5463959.1};
RA Martinez-Garcia P.J., Crepeau M.W., Puiu D., Gonzalez-Ibeas D., Whalen J.,
RA Stevens K., Paul R., Butterfield T., Britton M., Reagan R., Chakraborty S.,
RA Walawage S.L., Vasquez-Gross H.A., Cardeno C., Famula R., Pratt K.,
RA Kuruganti S., Aradhya M.K., Leslie C.A., Dandekar A.M., Salzberg S.L.,
RA Wegrzyn J.L., Langley C.H., Neale D.B.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KAF5463959.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:KAF5463959.1};
RA Marrano A., Britton M., Zimin A.V., Zaini P.A., Workman R., Puiu D.,
RA Bianco L., Allen B.J., Troggio M., Leslie C.A., Timp W., Dendekar A.,
RA Salzberg S.L., Neale D.B.;
RT "Walnut 2.0.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|RefSeq:XP_018826495.1}
RP IDENTIFICATION.
RC TISSUE=Leaves {ECO:0000313|RefSeq:XP_018826495.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SF3B4 family.
CC {ECO:0000256|ARBA:ARBA00008363}.
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DR EMBL; LIHL02000007; KAF5463959.1; -; Genomic_DNA.
DR RefSeq; XP_018826495.1; XM_018970950.2.
DR STRING; 51240.A0A2I4F4B5; -.
DR EnsemblPlants; Jr07_03600_p1; cds.Jr07_03600_p1; Jr07_03600.
DR GeneID; 108995376; -.
DR Gramene; Jr07_03600_p1; cds.Jr07_03600_p1; Jr07_03600.
DR KEGG; jre:108995376; -.
DR OrthoDB; 21912at2759; -.
DR Proteomes; UP000235220; Chromosome 7.
DR Proteomes; UP000619265; Unassembled WGS sequence.
DR GO; GO:0005689; C:U12-type spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0048026; P:positive regulation of mRNA splicing, via spliceosome; IBA:GO_Central.
DR CDD; cd12334; RRM1_SF3B4; 1.
DR CDD; cd12335; RRM2_SF3B4; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR034158; SF3B4_RRM1.
DR InterPro; IPR034159; SF3B4_RRM2.
DR PANTHER; PTHR48030; SPLICING FACTOR 3B SUBUNIT 4; 1.
DR PANTHER; PTHR48030:SF3; SPLICING FACTOR 3B, SUBUNIT 4; 1.
DR Pfam; PF00076; RRM_1; 2.
DR PRINTS; PR01217; PRICHEXTENSN.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 2.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000235220};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 25..103
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 112..191
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 245..374
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 284..374
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 374 AA; 40407 MW; 7098DBCDD65BFE31 CRC64;
MTTRIAPGVG ANLLGQHSAE RNQDATAYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR
VTNLHQGYGF VEFRSEEDAD YAIKVLNMIK LYGKPIRVNK ASQDKKSLDV GANLFIGNLD
PDVDEKLLYD TFSAFGVIVT NPKIMRDPES GNSRGFGFIS YDSFEASDAA IEAMTGQYLC
NRQITVSYAY KKDTKGERHG TPAERVLAAS NPTAQKSRPH TLFASGPPTL LNVPQANGTV
PPRPFANGSV APSPIPALRP PQGAAFHPMP MGGQPAWQGQ PQQLGQPIPP PVMPPQLQHF
RPPPPNMPPP LAAPGPPRPL PPPMGMGVQP PMWRPPPPPP LQQQPSRPPM PQGSMPPPPP
MHNPNNPPLP PSSS
//
