ID A0A2J6JKW8_LACSA Unreviewed; 929 AA.
AC A0A2J6JKW8;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=SWI/SNF complex subunit SWI3D {ECO:0008006|Google:ProtNLM};
GN ORFNames=LSAT_7X89080 {ECO:0000313|EMBL:PLY63454.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY63454.1};
RN [1] {ECO:0000313|EMBL:PLY63454.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY63454.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; NBSK01011016; PLY63454.1; -; Genomic_DNA.
DR STRING; 4236.A0A2J6JKW8; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_7X89080_mrna; cds-PLY63454.1; gene-LSAT_7X89080.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_7X89080_mrna; cds-PLY63454.1; gene-LSAT_7X89080.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0051171; P:regulation of nitrogen compound metabolic process; IEA:UniProt.
DR GO; GO:0080090; P:regulation of primary metabolic process; IEA:UniProt.
DR CDD; cd00167; SANT; 1.
DR CDD; cd02336; ZZ_RSC8; 1.
DR Gene3D; 3.30.60.90; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR041984; Rsc8/Ssr1/Ssr2_ZZ.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR032451; SMARCC_C.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR000433; Znf_ZZ.
DR InterPro; IPR043145; Znf_ZZ_sf.
DR PANTHER; PTHR12802; SWI/SNF COMPLEX-RELATED; 1.
DR PANTHER; PTHR12802:SF179; SWI_SNF COMPLEX SUBUNIT SWI3D; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF04433; SWIRM; 1.
DR Pfam; PF16495; SWIRM-assoc_1; 1.
DR Pfam; PF00569; ZZ; 1.
DR SMART; SM00717; SANT; 1.
DR SMART; SM00291; ZnF_ZZ; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50090; MYB_LIKE; 1.
DR PROSITE; PS51293; SANT; 1.
DR PROSITE; PS50934; SWIRM; 1.
DR PROSITE; PS01357; ZF_ZZ_1; 1.
DR PROSITE; PS50135; ZF_ZZ_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00228}.
FT DOMAIN 144..241
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT DOMAIN 312..366
FT /note="ZZ-type"
FT /evidence="ECO:0000259|PROSITE:PS50135"
FT DOMAIN 369..420
FT /note="SANT"
FT /evidence="ECO:0000259|PROSITE:PS51293"
FT DOMAIN 372..416
FT /note="Myb-like"
FT /evidence="ECO:0000259|PROSITE:PS50090"
FT REGION 1..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 422..511
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 645..792
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 878..929
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..24
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 35..58
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 433..488
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 645..684
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 697..752
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 764..785
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 891..929
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 929 AA; 103192 MW; EA5FA8FEAD56E112 CRC64;
MEEKHNSPAT ATETALQSSA EPPSSRRRGG GLKRKASNIS NSITSTPPPS SSKRQTREKP
SPVLFPPIHN GPCTRARLQP NYTDSTAFWD AVIVNGEGEG SMLSTPVAAK VEEELIARKE
AWEALELKIE AEYEDLKSRD ANAHVAPISS GWFSWTKLHP LEERALPSFF NGKLENRTPE
IYMEIRNSIM KKFHANPNTQ LEEKDLSEIS VGELDAKKEV MEFLDYWGLI NYHPFPETDL
PTSMADAEES EETEKAEKAE KVNSLIQKLY EFEVEQLCTP AVPRSSFATP AVTSRLPETM
IADESLQPEG PSVEYHCNSC AADCSRKRYH CQKQADYDLC TECFNAGKFD SDMSPSDFIL
MEPADAAVTS SGKWTDQETL LLLEALELFS ENWNEIAEHV ATKTKAQCIL HFVQMPIEDT
FRDCDDEEDD DSSHKEKDLK KDESCNENEE KKEVDENDEK MEGGVDGISD SVDVKETEES
KALVENDDSP PDDSSPMEIS ESVIPGNLKD NQENGVDVAL KALREAFEVV GSLPSIDEKL
SFADAGNPVM AMAAFLTRLV DPNIATATAR NSLKSVSSGA TGLQLSARHS FIIEDPVDEK
KKPEEAERSK GHFRNFPFNS TSYKYELTLK GYILCRDDVE EAVEQEDLKE KNDSDKEGIN
GTEKDKELVV ADEKKEDEGV TTEVVVSKKG KNTRRKKGKE GKESVAVEES NEQKSEAENS
SSSKKVSEDS GESVPKDEEM SEKTEEPHEP NNDNTSMAEN TENSGEAEAK ECKNVKKKQA
PEAETKNDQN IHNMTRAAVT AISAAAVKAK LLADQEEDQI RKLATSLIEK QLQKLETKLA
FFTEMDGVVA RARDQLERSK QRLYHERAQI IAARLGMSST TAAATPIPQP PRAGMSFPNP
TQRPPNPNPN PMTNPMTMTP PQRPPPSXR
//
