ID A0A2J6JPK0_LACSA Unreviewed; 674 AA.
AC A0A2J6JPK0;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE RecName: Full=TFIID subunit TAF5 NTD2 domain-containing protein {ECO:0000259|Pfam:PF04494};
GN ORFNames=LSAT_6X77900 {ECO:0000313|EMBL:PLY64745.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY64745.1};
RN [1] {ECO:0000313|EMBL:PLY64745.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- SIMILARITY: Belongs to the WD repeat TAF5 family.
CC {ECO:0000256|ARBA:ARBA00009435}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY64745.1}.
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DR EMBL; NBSK01010514; PLY64745.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6JPK0; -.
DR STRING; 4236.A0A2J6JPK0; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_6X77900_mrna; cds-PLY64745.1; gene-LSAT_6X77900.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_6X77900_mrna; cds-PLY64745.1; gene-LSAT_6X77900.
DR OrthoDB; 3138699at2759; -.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd08044; TAF5_NTD2; 1.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 1.25.40.500; TFIID subunit TAF5, NTD2 domain; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR007582; TFIID_NTD2.
DR InterPro; IPR037264; TFIID_NTD2_sf.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19879:SF1; CANNONBALL-RELATED; 1.
DR PANTHER; PTHR19879; TRANSCRIPTION INITIATION FACTOR TFIID; 1.
DR Pfam; PF04494; TFIID_NTD2; 1.
DR Pfam; PF00400; WD40; 6.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF160897; Taf5 N-terminal domain-like; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS50007; PIPLC_X_DOMAIN; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 4.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 5.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 68..194
FT /note="TFIID subunit TAF5 NTD2"
FT /evidence="ECO:0000259|Pfam:PF04494"
FT REPEAT 417..449
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 459..500
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 501..542
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 543..584
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 585..620
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 249..283
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 249..275
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 674 AA; 74741 MW; 2388314B7B56EE50 CRC64;
MDEEVLDKAV YLYLKKKGFT QTEQIFQQEQ QNKNNKNSSS SITATDVSLS DPDLAKQILT
FSQSESIPTL YHDGYSKLRS WTYSSLDLYK HELLRVLYPV FIHCFMDLIA KSHLQEARAF
FNNFREDHEM MHSRDLTKLE GVLSPSHLEE MEFAHTLRQS KVNIKICQYS YDLLLQYLHK
TQSITMLGII NEHIDFQVSP GQPSSISDDA EAFSLVGSGQ DAANLINQKE IHWGLLEDSL
EDRLDKAGGL LSDSEKTEGE GKEGELDENK KKSTEGGKQG GPLIKLKKDK VVGGAGKAAR
GEGEKSTAAP RVKPELTLPT ISTDVEHSIL EDLRNRVQLN NSTLPSVSFY TFINTHNGLN
CSSISHDGSL VAGGFSDSSL KVWDMAKLGR MGSSVLQGEN DENTHGSNNG KRSYTLYQGH
SGPVYSASFS PFGDFLLSSS SDSTIRLWST KLNANVVCYK GHNYPVWDVQ FSPLGHYFAS
ASHDRTARIW SMDRIQPLRI LAGHLSDVDC VQWHMNCNYL ATGSSDKTVR LWDVQSGECI
RIFIGHRSMI LSLAMSPDGR YMASGDEDGS IMMWDVSNGR CVTPLVGHTS CVWSLAFSCE
GSLLASGSAD STVKLWDVNT SVKPPKTEDN KSGNTNTNRL RSLKTLTTKS TPVYALRFSR
RNLLFGAGAL STNV
//