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Database: UniProt
Entry: A0A2J6JPK0_LACSA
LinkDB: A0A2J6JPK0_LACSA
Original site: A0A2J6JPK0_LACSA 
ID   A0A2J6JPK0_LACSA        Unreviewed;       674 AA.
AC   A0A2J6JPK0;
DT   28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT   28-MAR-2018, sequence version 1.
DT   24-JAN-2024, entry version 29.
DE   RecName: Full=TFIID subunit TAF5 NTD2 domain-containing protein {ECO:0000259|Pfam:PF04494};
GN   ORFNames=LSAT_6X77900 {ECO:0000313|EMBL:PLY64745.1};
OS   Lactuca sativa (Garden lettuce).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC   Lactucinae; Lactuca.
OX   NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY64745.1};
RN   [1] {ECO:0000313|EMBL:PLY64745.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=28401891; DOI=10.1038/ncomms14953;
RA   Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA   Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA   Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT   "Genome assembly with in vitro proximity ligation data and whole-genome
RT   triplication in lettuce.";
RL   Nat. Commun. 8:14953-14953(2017).
CC   -!- SIMILARITY: Belongs to the WD repeat TAF5 family.
CC       {ECO:0000256|ARBA:ARBA00009435}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PLY64745.1}.
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DR   EMBL; NBSK01010514; PLY64745.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2J6JPK0; -.
DR   STRING; 4236.A0A2J6JPK0; -.
DR   EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_6X77900_mrna; cds-PLY64745.1; gene-LSAT_6X77900.
DR   Gramene; rna-gnl|WGS:NBSK|LSAT_6X77900_mrna; cds-PLY64745.1; gene-LSAT_6X77900.
DR   OrthoDB; 3138699at2759; -.
DR   GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR   CDD; cd08044; TAF5_NTD2; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 1.25.40.500; TFIID subunit TAF5, NTD2 domain; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR006594; LisH.
DR   InterPro; IPR007582; TFIID_NTD2.
DR   InterPro; IPR037264; TFIID_NTD2_sf.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19879:SF1; CANNONBALL-RELATED; 1.
DR   PANTHER; PTHR19879; TRANSCRIPTION INITIATION FACTOR TFIID; 1.
DR   Pfam; PF04494; TFIID_NTD2; 1.
DR   Pfam; PF00400; WD40; 6.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 6.
DR   SUPFAM; SSF160897; Taf5 N-terminal domain-like; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50896; LISH; 1.
DR   PROSITE; PS50007; PIPLC_X_DOMAIN; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 4.
DR   PROSITE; PS50082; WD_REPEATS_2; 5.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 5.
PE   3: Inferred from homology;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   DOMAIN          68..194
FT                   /note="TFIID subunit TAF5 NTD2"
FT                   /evidence="ECO:0000259|Pfam:PF04494"
FT   REPEAT          417..449
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          459..500
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          501..542
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          543..584
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          585..620
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          249..283
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        249..275
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   674 AA;  74741 MW;  2388314B7B56EE50 CRC64;
     MDEEVLDKAV YLYLKKKGFT QTEQIFQQEQ QNKNNKNSSS SITATDVSLS DPDLAKQILT
     FSQSESIPTL YHDGYSKLRS WTYSSLDLYK HELLRVLYPV FIHCFMDLIA KSHLQEARAF
     FNNFREDHEM MHSRDLTKLE GVLSPSHLEE MEFAHTLRQS KVNIKICQYS YDLLLQYLHK
     TQSITMLGII NEHIDFQVSP GQPSSISDDA EAFSLVGSGQ DAANLINQKE IHWGLLEDSL
     EDRLDKAGGL LSDSEKTEGE GKEGELDENK KKSTEGGKQG GPLIKLKKDK VVGGAGKAAR
     GEGEKSTAAP RVKPELTLPT ISTDVEHSIL EDLRNRVQLN NSTLPSVSFY TFINTHNGLN
     CSSISHDGSL VAGGFSDSSL KVWDMAKLGR MGSSVLQGEN DENTHGSNNG KRSYTLYQGH
     SGPVYSASFS PFGDFLLSSS SDSTIRLWST KLNANVVCYK GHNYPVWDVQ FSPLGHYFAS
     ASHDRTARIW SMDRIQPLRI LAGHLSDVDC VQWHMNCNYL ATGSSDKTVR LWDVQSGECI
     RIFIGHRSMI LSLAMSPDGR YMASGDEDGS IMMWDVSNGR CVTPLVGHTS CVWSLAFSCE
     GSLLASGSAD STVKLWDVNT SVKPPKTEDN KSGNTNTNRL RSLKTLTTKS TPVYALRFSR
     RNLLFGAGAL STNV
//
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