ID A0A2J6JZF8_LACSA Unreviewed; 408 AA.
AC A0A2J6JZF8;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=LSAT_7X51121 {ECO:0000313|EMBL:PLY68170.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY68170.1};
RN [1] {ECO:0000313|EMBL:PLY68170.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY68170.1}.
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DR EMBL; NBSK01009359; PLY68170.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6JZF8; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_7X51121_mrna; cds-PLY68170.1; gene-LSAT_7X51121.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_7X51121_mrna; cds-PLY68170.1; gene-LSAT_7X51121.
DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0045892; P:negative regulation of DNA-templated transcription; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 3.30.40.100; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011124; Znf_CW.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS51050; ZF_CW; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 174..222
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 303..363
FT /note="CW-type"
FT /evidence="ECO:0000259|PROSITE:PS51050"
FT REGION 36..56
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 38..56
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 408 AA; 46390 MW; DCB36736005414E0 CRC64;
MMLIQSSIDA HLSSLHNNGK QEILCVWIQD NDHKNKNDSL SSSQISTEIN MSETSKPKPN
LVYKRRIIHK NSTSTPTPTP TLVYKRKKVQ TICCSSSKSN MEIGSVSLKQ QQQTDDIGEC
SSSVVMKDLS ETNSCFEFLE HHLVLQRFKG LKGLKGSCFN KVKDVEIEKG ICGLRVCKVC
EKSTLTLKML ICDLCEESFH MSCCNLKKVP VGDWFCHSCL SKKLKKMEGK SPKGYFGPIV
DMLRDVDCYK SDVRIGKDFQ AEVPDWSGPL IDQLNDYHNL SSEINPSDSA TYQDWDSSKL
SRLSCIGNWV QCREIVDHEN GIVCGKWRRA PLFEVQSDNW ECFSSVLWDP IHADCAVPQE
LCTDQVLKQL KYIEMLRPRL SAKRWKLRVH KGVDGEEHTG DPRNTQKS
//
