ID A0A2J6KG55_LACSA Unreviewed; 469 AA.
AC A0A2J6KG55;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE RecName: Full=U1-type domain-containing protein {ECO:0000259|SMART:SM00451};
GN ORFNames=LSAT_7X8881 {ECO:0000313|EMBL:PLY74024.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY74024.1};
RN [1] {ECO:0000313|EMBL:PLY74024.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY74024.1}.
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DR EMBL; NBSK01007491; PLY74024.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6KG55; -.
DR STRING; 4236.A0A2J6KG55; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_7X8881_mrna; cds-PLY74024.1; gene-LSAT_7X8881.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_7X8881_mrna; cds-PLY74024.1; gene-LSAT_7X8881.
DR OrthoDB; 625338at2759; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 2.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR022755; Znf_C2H2_jaz.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR47487; OS06G0651300 PROTEIN-RELATED; 1.
DR PANTHER; PTHR47487:SF3; U1-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF12171; zf-C2H2_jaz; 1.
DR Pfam; PF12874; zf-met; 1.
DR SMART; SM00451; ZnF_U1; 2.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 185..219
FT /note="U1-type"
FT /evidence="ECO:0000259|SMART:SM00451"
FT DOMAIN 270..304
FT /note="U1-type"
FT /evidence="ECO:0000259|SMART:SM00451"
FT REGION 1..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 145..181
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 228..256
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 369..469
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..70
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 76..122
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..247
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 369..401
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 444..469
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 469 AA; 51633 MW; 18DFD2E2434FC664 CRC64;
MDPYAAAPTY PPPPSAQIQP PTQDPYLYNQ PQPYPYYPPQ IPQQQYPNPN PVYQPHPEQE
PAPIHPPGVP VQNDPNHIAA YQQGYAQPHF QNDPYYQQQQ QPQPQPQPQQ LSYPDAGMVH
QGQHQWQPQG QTGEFGLTAL YPPNGQGQFS GSGRGTGRGG FRGGGQGRGR GKGRSGKITT
EPKPRAMAWC ELCRVDCNTL EILENHRNGK KHKKNLKIQE DLQKLAAKTQ ESQIPPAPES
EQQQNQNGLK RKTREVERKP VEAVKKQKEI VPFICELCDV KCESGPTFDS HLKGKKHVFN
LQRFQEQQAT LGQAALQALY PALEALYPAL LQTVTQNTNA STSTPLDHQL LQWLQSYLAQ
TGSAILPQGP GPVPVPGPSF GPLGPTQEGP VPVPGPGFVV PGPTQEGPKE VTGTQVEPVK
ETEIKIEEKV GPESGAGQVE LNRAEPEQEQ EPKPEEEAKV EPKAEEAKQ
//
