ID A0A2J6KRU4_LACSA Unreviewed; 320 AA.
AC A0A2J6KRU4;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein {ECO:0000259|SMART:SM00662};
GN ORFNames=LSAT_2X92080 {ECO:0000313|EMBL:PLY77790.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY77790.1};
RN [1] {ECO:0000313|EMBL:PLY77790.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS11 family.
CC {ECO:0000256|ARBA:ARBA00006194}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY77790.1}.
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DR EMBL; NBSK01006321; PLY77790.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6KRU4; -.
DR STRING; 4236.A0A2J6KRU4; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_2X92080_mrna; cds-PLY77790.1; gene-LSAT_2X92080.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_2X92080_mrna; cds-PLY77790.1; gene-LSAT_2X92080.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd06928; RNAP_alpha_NTD; 1.
DR Gene3D; 2.170.120.12; DNA-directed RNA polymerase, insert domain; 1.
DR Gene3D; 3.30.420.80; Ribosomal protein S11; 1.
DR Gene3D; 3.30.1360.10; RNA polymerase, RBP11-like subunit; 1.
DR HAMAP; MF_01310; Ribosomal_S11; 1.
DR InterPro; IPR011262; DNA-dir_RNA_pol_insert.
DR InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
DR InterPro; IPR036603; RBP11-like.
DR InterPro; IPR001971; Ribosomal_uS11.
DR InterPro; IPR036967; Ribosomal_uS11_sf.
DR InterPro; IPR036643; RNApol_insert_sf.
DR PANTHER; PTHR11759:SF3; 28S RIBOSOMAL PROTEIN S11, MITOCHONDRIAL; 1.
DR PANTHER; PTHR11759; 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11; 1.
DR Pfam; PF00411; Ribosomal_S11; 1.
DR Pfam; PF01000; RNA_pol_A_bac; 1.
DR Pfam; PF01193; RNA_pol_L; 1.
DR SMART; SM00662; RPOLD; 1.
DR SUPFAM; SSF56553; Insert subdomain of RNA polymerase alpha subunit; 1.
DR SUPFAM; SSF55257; RBP11-like subunits of RNA polymerase; 1.
DR SUPFAM; SSF53137; Translational machinery components; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 132..320
FT /note="DNA-directed RNA polymerase RpoA/D/Rpb3-type"
FT /evidence="ECO:0000259|SMART:SM00662"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 320 AA; 35172 MW; 846EE7E29C728825 CRC64;
MAKAIPKKGS RGRIGSRKST RKIPKGVIHI QASFNNTIVT VTDVRGRVVS WSSAGTSGFR
GTKRGTPFAA QTAAGHAIRA VVDQGMQRAE VMIKGPGLGR DAALRAIRRS VSTRTLQWKC
VESAADSKRL LYGRFILSPL MKGQADTIGI AMRRALLGEI EGTCITRAKS EKISHEYSTI
MGIQESVHEI LMNLKEIVLR SNLYGTCEAS ICVRGPGYVT AQDIILPPYV EILDNTQHIA
SLTEPIELVI GLQIEKNCGY LIKASNNFQD GSYPIDPVFM LVQNANHSIH SYENGNKEIL
FLEIWTNRSL TPKEALYETS
//