ID A0A2J6KWW3_LACSA Unreviewed; 596 AA.
AC A0A2J6KWW3;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=LSAT_2X87621 {ECO:0000313|EMBL:PLY79583.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY79583.1};
RN [1] {ECO:0000313|EMBL:PLY79583.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY79583.1}.
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DR EMBL; NBSK01005850; PLY79583.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6KWW3; -.
DR STRING; 4236.A0A2J6KWW3; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_2X87621_mrna; cds-PLY79583.1; gene-LSAT_2X87621.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_2X87621_mrna; cds-PLY79583.1; gene-LSAT_2X87621.
DR OrthoDB; 366604at2759; -.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:1990904; C:ribonucleoprotein complex; IBA:GO_Central.
DR GO; GO:0003730; F:mRNA 3'-UTR binding; IBA:GO_Central.
DR GO; GO:0008143; F:poly(A) binding; IBA:GO_Central.
DR GO; GO:0008266; F:poly(U) RNA binding; IBA:GO_Central.
DR CDD; cd00590; RRM_SF; 2.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR041337; hnRNP_Q_AcD.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR21245; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; 1.
DR PANTHER; PTHR21245:SF25; RNA-BINDING FAMILY PROTEIN; 1.
DR Pfam; PF18360; hnRNP_Q_AcD; 1.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 19..96
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 98..206
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 200..280
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 281..311
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 461..490
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 509..582
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 281..296
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 596 AA; 65970 MW; 0C7D350C08BA3E48 CRC64;
MSYSLDQNST DYQHGSRGVE VFVGGLARSL NEDKVRKVFA ACGEITDMRL IKDQNGILKG
FGFVRFATKE AADKALKELS GSMLEGKKIG VLPSAAQDTL FLGNLNKGWS ADDFNKVVRQ
VFPDVVSIDL AMPQSGSEAT SKKFKNRGFA FVKFSSHATA ARAFRAGSKP DFVLGGTLHP
SVQWVEEDPE VDPDELAKIK IAFVRKLPST IDEGYLKKLF MPFGKVEKVV VSSKGDSSVG
FVHFSQRSHL DNAIEGLNEK IVPGPKGGPS IKIQVEVARP MDKKRKRVHE DFQNTQPRDN
LNKPRPQNHD PYLNSFDGHE ETLQKEAVVD PHEAAVLLLP VAVRERLLRI LRLGIATRFD
IEVESLSNLA ELPESMAISV LDQFMLSGAE KHDKGGYLAA LISRYQVDKF GANQQPSSLS
RLREPVRAHL PSVDSLPYVD PSSRGDSYTS RYSTLYSDYR LPSRPGMVKT EDRSPIQLHE
LPGSSSSSSY GKYLVNSHIP TAYGNMEEMS PVQSHQIPGP SFAKPSQDPY SRIPGPIPTL
SFSKSGPSPD PQINDRPGSR PQMRFDPFTG QPYKFDPFTG EPIVPESLAR RYDSPY
//
