ID A0A2J6LDR3_LACSA Unreviewed; 349 AA.
AC A0A2J6LDR3;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=LSAT_3X33220 {ECO:0000313|EMBL:PLY85435.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY85435.1};
RN [1] {ECO:0000313|EMBL:PLY85435.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY85435.1}.
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DR EMBL; NBSK01004265; PLY85435.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6LDR3; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_3X33220_mrna; cds-PLY85435.1; gene-LSAT_3X33220.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_3X33220_mrna; cds-PLY85435.1; gene-LSAT_3X33220.
DR GO; GO:0016607; C:nuclear speck; IBA:GO_Central.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR CDD; cd00590; RRM_SF; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR23147:SF129; RNA RECOGNITION MOTIF; 1.
DR PANTHER; PTHR23147; SERINE/ARGININE RICH SPLICING FACTOR; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00023187};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 22..99
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 99..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 225..252
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 264..321
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 102..124
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 271..310
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 349 AA; 40068 MW; 689B300E37586E1B CRC64;
MRQWIEVWQK KKCTGARTVN ETTYFVSNVP SDVNREEIRK EFLRYGNVSD MYYPGKKGKN
GQFYLFIRFL DVEDKLALEK KIDGVTHKGR KLAINIEKHP RGTMASKTSN NRREHGVSNG
NQTQNFRDAR TFAEVARHRL LHHHHDQGKN FSAIVAQYGV IIAPYDDLPN YVDMSHVKIE
ILTRIKRRIN EEITISLMGV LNKIGSIEFD EDWFPFKFDS ISNPYVEDSN TEEDMDSDDG
ISDTWIPGNN NDLEEGEIEM ENADDQTDAG DADGDTNHGV EDGRSEATQV RDIPREEQPV
HAEIPPSEEY EQTHGELTPI KCNSKYATVA VNNNSQREEL GQMDEREEN
//
