ID A0A2J6LSX3_LACSA Unreviewed; 642 AA.
AC A0A2J6LSX3;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=LSAT_2X119300 {ECO:0000313|EMBL:PLY90334.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY90334.1};
RN [1] {ECO:0000313|EMBL:PLY90334.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY90334.1}.
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DR EMBL; NBSK01002402; PLY90334.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6LSX3; -.
DR STRING; 4236.A0A2J6LSX3; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_2X119300_mrna; cds-PLY90334.1; gene-LSAT_2X119300.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_2X119300_mrna; cds-PLY90334.1; gene-LSAT_2X119300.
DR OrthoDB; 1112799at2759; -.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF65; PROTEIN INVOLVED IN DE NOVO 2-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 47..90
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 121..231
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 508..637
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT REGION 1..35
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 97..116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 325..352
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 395..470
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 20..35
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 642 AA; 74661 MW; D1A1CB51EFC8F205 CRC64;
MEDYMDQSSG GDTDGSDSEV EEYVDKSYEE LQSGKHKVRL SDETFTCPYC RNKKKRDYQY
KDLLQHATMV GKSDSQKRNP KDKANHLALV KFLQKDISGN SNSGPSKPKE ETDNLADHDG
DELFVWPWKG IVVNLPTELK DGRYVGKSGS NMRDHLTARG FNPTRVHPLW NYRGHSGSAV
VEFNKGWDGF KNAMSFEKAY EADHRGKRDW KVNDDPKSDI YGWVARADDY KALNIIGEHL
RKIGDLRTVS DIMAEEERKA NTLVSTLTRE VEVKKRTFEE METLYVETEN SLSKVIEEKD
LLHQSYNDEL KKIQASAHDH FKKIFNDHEK IKLQLENQKK ELELRGNELE KREVVNENER
KKLTEEIEEN AVKNSLLQMA SDEQRKADES VMKLAEDQKR EKEELHKKII NLEKQLDAKQ
AVELEIERLK GQLNVMKHIG DVDLEVLKEV EEIHKNLRDK EEELEHIQSL NQTLVVQERK
RNDELQDARK ELIEGLKELP KSAHIGVKRM GELENKPFLD AMKRKYGDMD AEDRASEMCS
LWEEYLRDPN WHPFKVITVD EQSQRLIDES DDKLKSLKRD LGEDVYKAVT TALTEINDYN
PSGSYITTEL WNFAQGRKAL LQEGASYLLD LWDSAQKRRR IM
//
