ID A0A2J6MGD2_LACSA Unreviewed; 373 AA.
AC A0A2J6MGD2;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 13-SEP-2023, entry version 21.
DE RecName: Full=RanBD1 domain-containing protein {ECO:0000259|PROSITE:PS50196};
GN ORFNames=LSAT_1X34841 {ECO:0000313|EMBL:PLY98650.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY98650.1};
RN [1] {ECO:0000313|EMBL:PLY98650.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- SUBCELLULAR LOCATION: Nucleus, nuclear pore complex
CC {ECO:0000256|ARBA:ARBA00004567}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY98650.1}.
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DR EMBL; NBSK01000138; PLY98650.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6MGD2; -.
DR STRING; 4236.A0A2J6MGD2; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_1X34841_mrna; cds-PLY98650.1; gene-LSAT_1X34841.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_1X34841_mrna; cds-PLY98650.1; gene-LSAT_1X34841.
DR OrthoDB; 307490at2759; -.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005643; C:nuclear pore; IBA:GO_Central.
DR GO; GO:0046907; P:intracellular transport; IEA:InterPro.
DR GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR CDD; cd13169; RanBD_NUP50_plant; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR InterPro; IPR015007; NUP2/50/61.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR000156; Ran_bind_dom.
DR InterPro; IPR045207; RanBD_NUP50_plant.
DR InterPro; IPR045255; RanBP1-like.
DR PANTHER; PTHR23138:SF142; NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATED; 1.
DR PANTHER; PTHR23138; RAN BINDING PROTEIN; 1.
DR Pfam; PF08911; NUP50; 1.
DR Pfam; PF00638; Ran_BP1; 1.
DR SMART; SM00160; RanBD; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR PROSITE; PS50196; RANBD1; 1.
PE 4: Predicted;
KW mRNA transport {ECO:0000256|ARBA:ARBA00022816};
KW Nuclear pore complex {ECO:0000256|ARBA:ARBA00023132};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Protein transport {ECO:0000256|ARBA:ARBA00023132};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Translocation {ECO:0000256|ARBA:ARBA00023010};
KW Transport {ECO:0000256|ARBA:ARBA00022816}.
FT DOMAIN 222..346
FT /note="RanBD1"
FT /evidence="ECO:0000259|PROSITE:PS50196"
FT REGION 1..156
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 347..373
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..29
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..71
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 121..146
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 373 AA; 39867 MW; 97CF529ACA08CB2E CRC64;
MGDTDNSIPP SKKRAAGREL SRDNPGLDDE EEVSGQENAT FKRASEEVIA NRRIVKVRRS
QPSSTPSTNP FAAIRLVPPT DPTPTNPQEP DKTSPDNLQE PGKTAPEEVE SPSSVNKETE
PEGASEVRKP EPTDPEPKKD EKLGNDKSTP TAPASVNSFQ QLSSSQNAFT GLVGTGFSSS
TFSFGSIPKT DSPTFPSFGF GTNGNSSLFG TPSGTSDKPS GIKIPTMQEV HVETGEENEK
AVFTADSVLF EFLDGGWKER GKGELKVNVL TTGTKKARLV MRARGNYRLI LNASIFPDMK
LTNMEKKGIT FACLNSTGEG QNGLSTFALK FKDPAIVDEF REVVNEHKGN TGGGGAAAAV
LKTPENSPKA SDE
//
