ID A0A2J6MJV2_LACSA Unreviewed; 482 AA.
AC A0A2J6MJV2;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=LSAT_4X31720 {ECO:0000313|EMBL:PLY99880.1};
OS Lactuca sativa (Garden lettuce).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae;
OC Lactucinae; Lactuca.
OX NCBI_TaxID=4236 {ECO:0000313|EMBL:PLY99880.1};
RN [1] {ECO:0000313|EMBL:PLY99880.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28401891; DOI=10.1038/ncomms14953;
RA Reyes-Chin-Wo S., Wang Z., Yang X., Kozik A., Arikit S., Song C., Xia L.,
RA Froenicke L., Lavelle D.O., Truco M.J., Xia R., Zhu S., Xu C., Xu H.,
RA Xu X., Cox K., Korf I., Meyers B.C., Michelmore R.W.;
RT "Genome assembly with in vitro proximity ligation data and whole-genome
RT triplication in lettuce.";
RL Nat. Commun. 8:14953-14953(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PLY99880.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; NBSK01000006; PLY99880.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2J6MJV2; -.
DR STRING; 4236.A0A2J6MJV2; -.
DR EnsemblPlants; rna-gnl|WGS:NBSK|LSAT_4X31720_mrna; cds-PLY99880.1; gene-LSAT_4X31720.
DR Gramene; rna-gnl|WGS:NBSK|LSAT_4X31720_mrna; cds-PLY99880.1; gene-LSAT_4X31720.
DR OrthoDB; 3184171at2759; -.
DR GO; GO:0005737; C:cytoplasm; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR GO; GO:0003682; F:chromatin binding; IEA:EnsemblPlants.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants.
DR GO; GO:0071395; P:cellular response to jasmonic acid stimulus; IEA:EnsemblPlants.
DR GO; GO:0042742; P:defense response to bacterium; IEA:EnsemblPlants.
DR GO; GO:0050832; P:defense response to fungus; IEA:EnsemblPlants.
DR GO; GO:0040029; P:epigenetic regulation of gene expression; IEA:EnsemblPlants.
DR GO; GO:0045087; P:innate immune response; IEA:EnsemblPlants.
DR GO; GO:0045824; P:negative regulation of innate immune response; IEA:EnsemblPlants.
DR GO; GO:0045893; P:positive regulation of DNA-templated transcription; IEA:EnsemblPlants.
DR GO; GO:1905933; P:regulation of cell fate determination; IEA:EnsemblPlants.
DR GO; GO:0009909; P:regulation of flower development; IEA:EnsemblPlants.
DR GO; GO:0010439; P:regulation of glucosinolate biosynthetic process; IEA:EnsemblPlants.
DR CDD; cd00590; RRM_SF; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003954; RRM_dom_euk.
DR PANTHER; PTHR21245; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; 1.
DR PANTHER; PTHR21245:SF10; SYNCRIP, ISOFORM Q; 1.
DR Pfam; PF00076; RRM_1; 3.
DR SMART; SM00360; RRM; 3.
DR SMART; SM00361; RRM_1; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 103..181
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 183..265
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 278..355
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 438..482
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..43
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 44..61
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 73..89
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 482 AA; 53410 MW; 879C4A0A0954807E CRC64;
MADSSREIDD QVDFEDDNYE EVDDDVEEEE EGPEGGDDEM GEEHEDISGY HGKDHDEDRN
QNQNQNQNQN ASGHVDDEEK KSPFSREDNK KHTELLALPP HGSEIFIGGL PKDVVEEDLT
DLCEPFGDVV EVRLVKNRDT NEIKGFAFVA FRTKDVAQKA IEELHNKEFK GRTIRCSLSE
TKYRLFIGNV PKSWTDDDFR KVIEETGPGS EVIELIKDPQ NPPRNRGFAF VEYYNNACAD
YSRQKLASAN FKLDGNTPTV TWADPKSTPD HSAAAQVKAL YVKNIPENTS TEHLKELFQR
HGEVIKVVMP PAKAGGKRDF GFVHFAERSS ALKAVKDGEK YEVEGQFLEV VLAKPQSDRK
SDNISPHYSG PHPNYIPQNV YGGFSSNPYG GSVGPRYGVT PSFQQPMIYG RGPVPGGMQM
VPMVLPDGQI GYVLQQPGAQ MPAARPPRRN ERSSSNGSGG ARRGGGGSGG GGGDDRGRYR
PY
//
