ID A0A2K1IIG9_PHYPA Unreviewed; 607 AA.
AC A0A2K1IIG9;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=Reverse transcriptase Ty1/copia-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHYPA_027763 {ECO:0000313|EMBL:PNR29071.1};
OS Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta;
OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium.
OX NCBI_TaxID=3218 {ECO:0000313|EMBL:PNR29071.1};
RN [1] {ECO:0000313|EMBL:PNR29071.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c23_8160V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=18079367; DOI=10.1126/science.1150646;
RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H.,
RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T.,
RA Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A.,
RA Suzuki Y., Hashimoto S.-I., Yamaguchi K., Sugano S., Kohara Y.,
RA Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E.,
RA Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M.,
RA Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J.,
RA Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B.,
RA Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A.,
RA Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y.,
RA Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M.,
RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S.,
RA Boore J.L.;
RT "The Physcomitrella genome reveals evolutionary insights into the conquest
RT of land by plants.";
RL Science 319:64-69(2008).
RN [2] {ECO:0000313|EMBL:PNR29071.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c23_8160V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=29237241; DOI=10.1111/tpj.13801;
RA Lang D., Ullrich K.K., Murat F., Fuchs J., Jenkins J., Haas F.B.,
RA Piednoel M., Gundlach H., Van Bel M., Meyberg R., Vives C., Morata J.,
RA Symeonidi A., Hiss M., Muchero W., Kamisugi Y., Saleh O., Blanc G.,
RA Decker E.L., van Gessel N., Grimwood J., Hayes R.D., Graham S.W.,
RA Gunter L.E., McDaniel S.F., Hoernstein S.N.W., Larsson A., Li F.W.,
RA Perroud P.F., Phillips J., Ranjan P., Rokshar D.S., Rothfels C.J.,
RA Schneider L., Shu S., Stevenson D.W., Thummler F., Tillich M.,
RA Villarreal Aguilar J.C., Widiez T., Wong G.K., Wymore A., Zhang Y.,
RA Zimmer A.D., Quatrano R.S., Mayer K.F.X., Goodstein D., Casacuberta J.M.,
RA Vandepoele K., Reski R., Cuming A.C., Tuskan G.A., Maumus F., Salse J.,
RA Schmutz J., Rensing S.A.;
RT "The Physcomitrella patens chromosome-scale assembly reveals moss genome
RT structure and evolution.";
RL Plant J. 93:515-533(2018).
RN [3] {ECO:0000313|EnsemblPlants:Pp3c23_8160V3.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (DEC-2020) to UniProtKB.
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DR EMBL; ABEU02000023; PNR29071.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1IIG9; -.
DR STRING; 3218.A0A2K1IIG9; -.
DR EnsemblPlants; Pp3c23_8160V3.1; Pp3c23_8160V3.1; Pp3c23_8160.
DR Gramene; Pp3c23_8160V3.1; Pp3c23_8160V3.1; Pp3c23_8160.
DR InParanoid; A0A2K1IIG9; -.
DR Proteomes; UP000006727; Chromosome 23.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.40.970.10; Ribonuclease H1, N-terminal domain; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR009027; Ribosomal_bL9/RNase_H1_N.
DR InterPro; IPR011320; RNase_H1_N.
DR InterPro; IPR037056; RNase_H1_N_sf.
DR InterPro; IPR013103; RVT_2.
DR PANTHER; PTHR45895; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR PANTHER; PTHR45895:SF140; TRANSPOSON TY1-BL GAG-POL POLYPROTEIN-RELATED; 1.
DR Pfam; PF01693; Cauli_VI; 1.
DR Pfam; PF07727; RVT_2; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF55658; L9 N-domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006727}.
FT DOMAIN 200..302
FT /note="Reverse transcriptase Ty1/copia-type"
FT /evidence="ECO:0000259|Pfam:PF07727"
FT DOMAIN 561..604
FT /note="Ribonuclease H1 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF01693"
FT REGION 46..88
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 128..194
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 46..75
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 148..190
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 607 AA; 69277 MW; FF3461C9E0443451 CRC64;
MAEKQTCQYI KWLRTDRGGE FLSAAFSEYL QSHSIVLTLA LRSDHPGQGQ NNASVGTSSS
PNMARGSQGG SLHPKSNPDV HNGAHARHKL DPRSIAGCLV GYDDCSKAYR IYIPSTNKII
PAAANQDPFS RFSQSPPLSD HVDQCRDQVS HTSTTSPRSS ATLAGQELNN NSPKKPPATL
TESPLNLPTE DNILSPRHPS VETSWTISHM DIITAFFHGP YKEEVYVTQP EGFQIPGREN
LVYRLRKALY GLRQAPRSWY EEIDKILKNI RFKPGMGDHN HYSRFDHKNI ILVALYVNDL
LMEKCTQVHN GIFLTQRSYA KRILETYGMD QCKSAATLMD ERCKLAVNMG EEEMIGSLLH
LTITRLDIKY STRVCSRFMQ TPQQPHLAAK RILRYIKGNT QDARSTTGFI FRLGKSPITW
YSKKQRTVAL SSSEAEYRAL TDASKTASLL RMLFQDLHFK IEFSIRIFCD NIGSIRMAIN
PEANPRTRHV VAHYHFTRER IEEGELELEY IPILEQLADI FTKPLGRSLF EKFRNEHNIM
IPPSAGSSTH HWRIPRSENY KFYVVKEGRR PGIYSTWNEC EAFVKHFQGT KYKGFMTLQD
AENFFFN
//
