ID A0A2K1IRY3_PHYPA Unreviewed; 423 AA.
AC A0A2K1IRY3;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE RecName: Full=Phosphoribulokinase {ECO:0000256|RuleBase:RU004082};
DE EC=2.7.1.19 {ECO:0000256|RuleBase:RU004082};
GN ORFNames=PHYPA_026161 {ECO:0000313|EMBL:PNR32036.1};
OS Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta;
OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium.
OX NCBI_TaxID=3218 {ECO:0000313|EMBL:PNR32036.1};
RN [1] {ECO:0000313|EMBL:PNR32036.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c21_14450V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=18079367; DOI=10.1126/science.1150646;
RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H.,
RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T.,
RA Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A.,
RA Suzuki Y., Hashimoto S.-I., Yamaguchi K., Sugano S., Kohara Y.,
RA Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E.,
RA Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M.,
RA Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J.,
RA Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B.,
RA Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A.,
RA Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y.,
RA Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M.,
RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S.,
RA Boore J.L.;
RT "The Physcomitrella genome reveals evolutionary insights into the conquest
RT of land by plants.";
RL Science 319:64-69(2008).
RN [2] {ECO:0000313|EMBL:PNR32036.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c21_14450V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=29237241; DOI=10.1111/tpj.13801;
RA Lang D., Ullrich K.K., Murat F., Fuchs J., Jenkins J., Haas F.B.,
RA Piednoel M., Gundlach H., Van Bel M., Meyberg R., Vives C., Morata J.,
RA Symeonidi A., Hiss M., Muchero W., Kamisugi Y., Saleh O., Blanc G.,
RA Decker E.L., van Gessel N., Grimwood J., Hayes R.D., Graham S.W.,
RA Gunter L.E., McDaniel S.F., Hoernstein S.N.W., Larsson A., Li F.W.,
RA Perroud P.F., Phillips J., Ranjan P., Rokshar D.S., Rothfels C.J.,
RA Schneider L., Shu S., Stevenson D.W., Thummler F., Tillich M.,
RA Villarreal Aguilar J.C., Widiez T., Wong G.K., Wymore A., Zhang Y.,
RA Zimmer A.D., Quatrano R.S., Mayer K.F.X., Goodstein D., Casacuberta J.M.,
RA Vandepoele K., Reski R., Cuming A.C., Tuskan G.A., Maumus F., Salse J.,
RA Schmutz J., Rensing S.A.;
RT "The Physcomitrella patens chromosome-scale assembly reveals moss genome
RT structure and evolution.";
RL Plant J. 93:515-533(2018).
RN [3] {ECO:0000313|EnsemblPlants:Pp3c21_14450V3.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (DEC-2020) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + D-ribulose 5-phosphate = ADP + D-ribulose 1,5-
CC bisphosphate + H(+); Xref=Rhea:RHEA:19365, ChEBI:CHEBI:15378,
CC ChEBI:CHEBI:30616, ChEBI:CHEBI:57870, ChEBI:CHEBI:58121,
CC ChEBI:CHEBI:456216; EC=2.7.1.19;
CC Evidence={ECO:0000256|ARBA:ARBA00001430,
CC ECO:0000256|RuleBase:RU004082};
CC -!- PATHWAY: Carbohydrate biosynthesis; Calvin cycle.
CC {ECO:0000256|ARBA:ARBA00005215}.
CC -!- SIMILARITY: Belongs to the phosphoribulokinase family.
CC {ECO:0000256|ARBA:ARBA00009719, ECO:0000256|RuleBase:RU004082}.
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DR EMBL; ABEU02000021; PNR32036.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1IRY3; -.
DR STRING; 3218.A0A2K1IRY3; -.
DR PaxDb; 3218-PP1S132_175V6-1; -.
DR EnsemblPlants; Pp3c21_14450V3.1; Pp3c21_14450V3.1; Pp3c21_14450.
DR EnsemblPlants; Pp3c21_14450V3.2; Pp3c21_14450V3.2; Pp3c21_14450.
DR Gramene; Pp3c21_14450V3.1; Pp3c21_14450V3.1; Pp3c21_14450.
DR Gramene; Pp3c21_14450V3.2; Pp3c21_14450V3.2; Pp3c21_14450.
DR InParanoid; A0A2K1IRY3; -.
DR OMA; GLKMRAT; -.
DR OrthoDB; 276087at2759; -.
DR UniPathway; UPA00116; -.
DR Proteomes; UP000006727; Chromosome 21.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0008974; F:phosphoribulokinase activity; IEA:UniProtKB-EC.
DR GO; GO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-UniPathway.
DR CDD; cd02026; PRK; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR006082; PRK.
DR InterPro; IPR006083; PRK/URK.
DR PANTHER; PTHR10285:SF220; PHOSPHORIBULOKINASE; 1.
DR PANTHER; PTHR10285; URIDINE KINASE; 1.
DR Pfam; PF00485; PRK; 1.
DR PRINTS; PR00478; PHRIBLKINASE.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00567; PHOSPHORIBULOKINASE; 1.
PE 3: Inferred from homology;
KW Calvin cycle {ECO:0000256|ARBA:ARBA00022567};
KW Photosynthesis {ECO:0000256|ARBA:ARBA00022531};
KW Reference proteome {ECO:0000313|Proteomes:UP000006727}.
FT DOMAIN 78..276
FT /note="Phosphoribulokinase/uridine kinase"
FT /evidence="ECO:0000259|Pfam:PF00485"
SQ SEQUENCE 423 AA; 46463 MW; 3888FDEA2BE84D8A CRC64;
MAAMACTSAA SKTVFTPRLG SVKSVKSVRS VQLTSAFHGQ SVARVSQVAR FKSADVVSKG
AGRRAVVVCK AADGKTVVIG LAADSGCGKS TFMRRLTSVF GGAASPPKGG NPDSNTLISD
TTTVICLDDY HSLDRYGRKE AAVTALDPRA NNFDLMYEQV KALKEGKSVE KPIYNHVTGL
LDAPETIHPP KILVIEGLHP MYDERVRELL DFSIYLDISD DVKFAWKIQR DMAERGHSLE
SIKASIAARK PDFDAFIDPQ KQYADVVIQV LPTQLIPDDN EGKVLRVRMV MKEGVPFFEP
VYLFDEGSTI SWIPCGRKLT CSYPGIKFFY GPDTYYGNEV SVLEMDGQFD KLDELIYVES
HLSNISTKFY GEITQQMLKH ADFPGSNNGT GLFQTICGLK IRGVYERILA NQNNAATLES
AKA
//