ID A0A2K1K709_PHYPA Unreviewed; 942 AA.
AC A0A2K1K709;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=Glycosyl hydrolase family 13 catalytic domain-containing protein {ECO:0000259|SMART:SM00642};
GN ORFNames=PHYPA_011452 {ECO:0000313|EMBL:PNR49556.1};
OS Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta;
OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium.
OX NCBI_TaxID=3218 {ECO:0000313|EMBL:PNR49556.1};
RN [1] {ECO:0000313|EMBL:PNR49556.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c8_12820V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=18079367; DOI=10.1126/science.1150646;
RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H.,
RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T.,
RA Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A.,
RA Suzuki Y., Hashimoto S.-I., Yamaguchi K., Sugano S., Kohara Y.,
RA Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E.,
RA Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M.,
RA Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J.,
RA Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B.,
RA Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A.,
RA Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y.,
RA Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M.,
RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S.,
RA Boore J.L.;
RT "The Physcomitrella genome reveals evolutionary insights into the conquest
RT of land by plants.";
RL Science 319:64-69(2008).
RN [2] {ECO:0000313|EMBL:PNR49556.1, ECO:0000313|Proteomes:UP000006727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Gransden 2004 {ECO:0000313|EnsemblPlants:Pp3c8_12820V3.1,
RC ECO:0000313|Proteomes:UP000006727};
RX PubMed=29237241; DOI=10.1111/tpj.13801;
RA Lang D., Ullrich K.K., Murat F., Fuchs J., Jenkins J., Haas F.B.,
RA Piednoel M., Gundlach H., Van Bel M., Meyberg R., Vives C., Morata J.,
RA Symeonidi A., Hiss M., Muchero W., Kamisugi Y., Saleh O., Blanc G.,
RA Decker E.L., van Gessel N., Grimwood J., Hayes R.D., Graham S.W.,
RA Gunter L.E., McDaniel S.F., Hoernstein S.N.W., Larsson A., Li F.W.,
RA Perroud P.F., Phillips J., Ranjan P., Rokshar D.S., Rothfels C.J.,
RA Schneider L., Shu S., Stevenson D.W., Thummler F., Tillich M.,
RA Villarreal Aguilar J.C., Widiez T., Wong G.K., Wymore A., Zhang Y.,
RA Zimmer A.D., Quatrano R.S., Mayer K.F.X., Goodstein D., Casacuberta J.M.,
RA Vandepoele K., Reski R., Cuming A.C., Tuskan G.A., Maumus F., Salse J.,
RA Schmutz J., Rensing S.A.;
RT "The Physcomitrella patens chromosome-scale assembly reveals moss genome
RT structure and evolution.";
RL Plant J. 93:515-533(2018).
RN [3] {ECO:0000313|EnsemblPlants:Pp3c8_12820V3.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (DEC-2020) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|ARBA:ARBA00004229}.
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DR EMBL; ABEU02000008; PNR49556.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1K709; -.
DR STRING; 3218.A0A2K1K709; -.
DR PaxDb; 3218-PP1S62_201V6-2; -.
DR EnsemblPlants; Pp3c8_12820V3.1; Pp3c8_12820V3.1; Pp3c8_12820.
DR EnsemblPlants; Pp3c8_12820V3.2; Pp3c8_12820V3.2; Pp3c8_12820.
DR Gramene; Pp3c8_12820V3.1; Pp3c8_12820V3.1; Pp3c8_12820.
DR Gramene; Pp3c8_12820V3.2; Pp3c8_12820V3.2; Pp3c8_12820.
DR InParanoid; A0A2K1K709; -.
DR OMA; WHVSLAS; -.
DR OrthoDB; 610at2759; -.
DR Proteomes; UP000006727; Chromosome 8.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0019156; F:isoamylase activity; IEA:InterPro.
DR GO; GO:0019252; P:starch biosynthetic process; IEA:InterPro.
DR CDD; cd11346; AmyAc_plant_IsoA; 1.
DR CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR InterPro; IPR044096; AmyAc_plant_ISA2.
DR InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR004193; Glyco_hydro_13_N.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR014756; Ig_E-set.
DR InterPro; IPR048650; ISOA1-3-like_C.
DR PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR PANTHER; PTHR43002:SF6; ISOAMYLASE 2, CHLOROPLASTIC; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR Pfam; PF02922; CBM_48; 1.
DR Pfam; PF21156; ISOA1-3_C; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 4: Predicted;
KW Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW Plastid {ECO:0000256|ARBA:ARBA00022640};
KW Reference proteome {ECO:0000313|Proteomes:UP000006727};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT DOMAIN 416..809
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
SQ SEQUENCE 942 AA; 104589 MW; F7033A3B70FD375A CRC64;
MKDIAMGTLL RPPAFSLSLA SVSASPSAHS LPLPLFKPAP LLSSSSSFAF PTRIPLCHPF
SYDLLRCCAL PDDSTLPTPT SAAPSAPRSD SDTHLWDSFV QAHSQEFRFR HDDDDIMLAA
PPPLPPQARQ PQLQKFLFHA QPHCKVEVAV SKEGADHFVI DIVVNTGDMF PKSNEPLKLH
WGLFRSDSTE WVLLEPDEAP GGTTVIMDGV IEAMQTPFVV GSQGNQTLSL TLDAAMAPFF
VNFVLLQPPT TEEEENLWIR GNQGSNFCIP VGMRRGRPDP LGVTWGKDGS VNFALYSLHA
ENVVLCLYEA DAIEPSLEID LYPSVHRTGY VWHIELESVG SYIRYGYRCK GQVGWESGGR
FHARNVLLDP YAKFIAPHVP GQEELPSPAP VLGWLLKGGV PFDWEGDAPP RIPLETLVAY
RLHVGTFTGE AENVDETSRG TFLGVLEKIP YLRSLGVNAV ILQPIFAWDE SKGCYYPISF
FSVMSCYGSS GDSRSASFAL KKLVKELHRN GIEVILDVVY SHTAENGDDG PKPTSFRGID
NATYYICDKF GVVAKSDYGT ENSFNCNHPT VQKLIMDSLQ YIVDEFHIDG FCFKNAACLI
TGPHGQGLSR PMLVESISFD SVLANVKLIA DLCSPINGVW KDVTFPHWKR WCEWNTQYKI
DVRRFLRGEP DQLSSFATRL CGSGDLFADG RGTQYSLNHI TSPYGFTLTD LVSYSDEEGD
ISEYSWNCGH EGPTDDPLVI EIRVKQVRNF LTTLFLSQGV PVLNMGDEYG NTKEGVLDVD
NSTCFQWEAM DSEFGKQITH LIRSLLALRI RRSDLLQVRG FLDLKRLTWH GLKPEQPLWE
CTESNILAVS LQSDIMQPNA NKSLGDLYIA YNPHPVSMMV TVPDAPADMI WLRIADTSLP
FPDNFLVEGQ PLQIEVDASS YVYDLHPYSS VILEARAGAG PQ
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