ID A0A2K1XI19_POPTR Unreviewed; 993 AA.
AC A0A2K1XI19;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=POPTR_015G047600 {ECO:0000313|EMBL:PNT00423.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT00423.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT00423.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM009304; PNT00423.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1XI19; -.
DR STRING; 3694.A0A2K1XI19; -.
DR InParanoid; A0A2K1XI19; -.
DR OMA; FQWNALV; -.
DR OrthoDB; 360798at2759; -.
DR Proteomes; UP000006729; Chromosome 15.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR24015:SF344; OS07G0203900 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 8.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 178..213
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 249..283
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 382..416
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 484..518
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 585..619
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 686..720
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 721..755
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 757..787
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 901..993
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
FT REGION 19..39
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..35
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 993 AA; 111278 MW; DC445F13F437EA46 CRC64;
MNWLQQLTNT IIIAPSLPSR HHHHHRHHHH HHQQQQSSLY RTNLKPHKSF NSLYSKSSLS
LSNQTDSLPD QTNRPSFLQE IAALCETDNL TTALILIQSH SQNAAFISLQ AKEAIGLLLQ
ACGNQKDIET GRRLHKFVSD STHYRNDYVL NTRLIKMYAM CGSPLDSRLV FDNMETKNLI
QWNALVSGYT RNGLYGDVVK VFMDLVSDTD FQPDNFTFPS VIKACGGILD VRLGEVIHGM
VIKMGLVLDV FVGNALVGMY GKCGAVDEAM KVFDFMPETN LVSWNSMICA FSENGFSRDS
FDLLMEMLGE EGLLPDVVTV VTILPVCAGE GEVDIGMGIH GLAVKLGLSE EVMVNNAMVY
MYSKCGYLNE AQMSFVKNNN KNVVSWNTMI SAFSLEGDVN EAFNLLQEMQ IQGEEMKANE
VTILNVLPAC LDKLQLRSLK ELHGYSFRHC FQHVELSNAF ILAYAKCGAL NSAEKVFHGI
GDKTVSSWNA LIGGHAQNGD PRKALHLLFQ MTYSGQQPDW FTISSLLLAC AHLKSLQYGK
EIHGYVLRNG LETDFFVGTS LLSHYIHCGK ASSARVLFDR MKDKNLVSWN AMISGYSQNG
LPYESLALFR KSLSEGIQSH EIAIVSVFGA CSQLSALRLG KEAHGYVLKA MQTEDAFVGC
SIIDMYAKSG CIKESRKVFD GLKDKNIASW NAIIAAHGIH GHGKEAIELY ERMKKVGQMP
DRFTYIGILM ACGHAGLVEE GLKYFKEMQN FNLIEPKLEH YACLIDMLAR AGRLDDALRL
VNEMPEEADN RIWSSLLRSC RTFGALEIGE KVAKKLLELE PDKAENYVLL SNLYAGLGKW
DGVRRVRQMM KEIGLQKDAG CSWIEVGGRV YSFVVGDSLQ PKSAEIRVIW RRLEERISEI
GYKPNTSSVL HEVGEEEKID ILRGHSEKLA ISFGLLKTTK GTTLRIYKNL RICADCHNAA
KLISKAVERE IVVRDNKRFH HFRDGLCSCC DYW
//
