ID A0A2K1XP09_POPTR Unreviewed; 920 AA.
AC A0A2K1XP09;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=RST domain-containing protein {ECO:0000259|PROSITE:PS51879};
GN ORFNames=POPTR_014G018000 {ECO:0000313|EMBL:PNT02519.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT02519.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT02519.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF4 family.
CC {ECO:0000256|ARBA:ARBA00006178}.
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DR EMBL; CM009303; PNT02519.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1XP09; -.
DR STRING; 3694.A0A2K1XP09; -.
DR InParanoid; A0A2K1XP09; -.
DR OMA; NQHSESI; -.
DR OrthoDB; 1222810at2759; -.
DR Proteomes; UP000006729; Chromosome 14.
DR ExpressionAtlas; A0A2K1XP09; baseline and differential.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd08045; TAF4; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR022003; RST.
DR InterPro; IPR045144; TAF4.
DR InterPro; IPR007900; TAF4_C.
DR PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR PANTHER; PTHR15138:SF14; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR Pfam; PF12174; RST; 1.
DR Pfam; PF05236; TAF4; 1.
DR PROSITE; PS51879; RST; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 176..247
FT /note="RST"
FT /evidence="ECO:0000259|PROSITE:PS51879"
FT REGION 1..159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 242..403
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 453..474
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 487..598
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 734..776
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 816..842
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..61
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 62..76
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..98
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 121..136
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 242..257
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 293..316
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 323..403
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 488..557
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 920 AA; 100973 MW; 6C46529A3B0BA54C CRC64;
MDPNIMRLLE EDEDETMHSG ADVEAFQAAL NRDIGGDVSN SQPSDSSAGK IGNANNTEEL
DAKNVQRQHH QEQHTSAMET KQNGPNAENQ QQQGGFPQEP THPPLLKKTS QDDIKQELVE
QAPLQTPQSI GMQSYEKNPI PKSEPDKMQS SDGDPHFLNF QKMSNQQTAG TDQAGNQKNS
KQIPFAILLP ALKPHLDKDR EMQLQTLYNK LRKNEIAKDQ FVRLMRNIVG DQVLRLAAAQ
LQSQPGTNQS QLQPQAGRQL DGRMPAGISA AQFPDPHHSV LHPRGSIPAE PSHNPPSAVQ
LQTDSSIVNS QKSKAVEWKP DSLVMQASQS HSSNASISNQ ERERSSISMQ GQNKQQQHVN
FPPTSFPMYG SSGGNYHPYS GTNVSTSGPS VKPQPHDPQT RQIPHHQNLG VTQIGGPMHS
MISTPKFERQ NSADDPSRVH SGSVSHYTNK SALQQNSAPW QAPSNREKSP ASFSSLNYVK
PGLLEQAGEQ QNKPQLSSPQ VLSPSPVEKG NAISGNLKDQ SLDKQSTKIV FSTVPPNSAP
PSIATQMDPN GQAGLRISSV ASPAGVNART PPKKPSVGQK KPFEALGSSP PASTKKHKVS
GAFSDQSIEQ LNDVTAVSGV NLREEEEQLF SGPKEDSRVS EASRRFVQEE EERLMLQKTP
LKKKLGEIMA KCGLKNFGTD VERCLSLCVE ERMRGLISNM IRLSKQRVDA EKPRHQTLIT
SDVRQQIMTM NRKAQEELEK KQAEAEKLQK VNEPEGDNGG EGEKEKDEGR VKSVKVNKEE
DDKMRTTAAN VAARAAVGGD DILSKWQLMA EQARQKREGG MEGASGSQPV KDVNRKPLSP
SGRNMMENLE AEKRSHVVPS SASGAGRKCG RNQAIVPQTK VVRTISVKDV MSVLEREPQM
SRSTLIYQLY ERIRSDATAE
//
