ID A0A2K1XSL1_POPTR Unreviewed; 604 AA.
AC A0A2K1XSL1;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 2.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=POPTR_014G087100 {ECO:0000313|EMBL:PNT03762.2};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT03762.2, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT03762.2, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
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DR EMBL; CM009303; PNT03762.2; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K1XSL1; -.
DR EnsemblPlants; Potri.014G087100.1.v4.1; Potri.014G087100.1.v4.1; Potri.014G087100.v4.1.
DR Gramene; Potri.014G087100.1.v4.1; Potri.014G087100.1.v4.1; Potri.014G087100.v4.1.
DR InParanoid; A0A2K1XSL1; -.
DR OrthoDB; 445296at2759; -.
DR Proteomes; UP000006729; Chromosome 14.
DR ExpressionAtlas; A0A2K1XSL1; baseline.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IEA:EnsemblPlants.
DR GO; GO:0000963; P:mitochondrial RNA processing; IEA:EnsemblPlants.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR24015:SF398; OS07G0259400 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 212..246
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 313..347
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 414..448
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 604 AA; 67111 MW; 9344FD30F389E10E CRC64;
MPPKTKTLLT KSLSLLPPTR LRSLTTVPES THLTDPHLTH SFCSRALNFS AKMGFLREGK
QVHSHVIKLG FCNVLSLQNQ ILNVYIKCKD FNYAHRLFDE MHVRNVVTWN TVICGLVDCR
GSDYESSVYM GFCYFRKMLL DKVGFDAITL NGLLRACLEL NDVEIGRELH CFIVKLGFAV
NSFVNSALVD LYGKCGLVKE ARRAFDEVYC RDLVLWNVML SCYAMNCLAE EASGFFKLMQ
EENFMTDGFT FSSMLNSCGT LGSCNLGRQI HGLSIKLSFD LDVLVASGLV DMYAKSENID
DARKAFDGMA ARNVVSWNTM VVGYGRLGDG GEAMKLLIGM FQEDLRPDEI TLASIIRSCS
SALTSCEIMQ VNAYVLKNGF HAFLSIANAL INAYSKGGSI AMALQCFNTV LEPDLVTWTS
LIGAYAFHSL PKNSIDTFEE MLADGVWPDQ IVFLEVLSAC SHAGLVNEGL HYFSLMKDYH
ILPGLEHYTC LIDLLGRAGL LDEAFNILNS MSIGYSSDTL GAFIGACKIH GDVKLAKWAA
EKLFEMEPNK PVNYTLMSSV FASEGHWHDV ARIHKLMRDR CGHGVPGCSW MEYAGTIDEV
PVKI
//
