ID A0A2K2C4S5_POPTR Unreviewed; 1104 AA.
AC A0A2K2C4S5;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=FYVE-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=POPTR_001G276900 {ECO:0000313|EMBL:PNT57032.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT57032.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT57032.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
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DR EMBL; CM009290; PNT57032.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K2C4S5; -.
DR Proteomes; UP000006729; Chromosome 1.
DR ExpressionAtlas; A0A2K2C4S5; differential.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00065; FYVE_like_SF; 1.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR027988; BRX_N.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR PANTHER; PTHR22870:SF437; X-LINKED RETINITIS PIGMENTOSA GTPASE REGULATOR-RELATED; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF16627; BRX_assoc; 1.
DR Pfam; PF13713; BRX_N; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 6.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 3.
DR PROSITE; PS50012; RCC1_3; 7.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 267..328
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 329..380
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 381..435
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 436..487
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 500..551
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 552..603
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 604..655
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 660..722
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 1031..1086
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 132..173
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 728..793
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 833..860
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 865..941
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 143..171
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 728..743
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1104 AA; 120104 MW; ABF28E8D207B66B4 CRC64;
MLRSDRMASD LSRTGPVERD MEQAITALKK GAYLLKYGRR GKPKFCPFRL SNDESVLIWF
SGKEEKHLRL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL IYNDRSLDLI CKDKDEAEVW
FSGLKALISR SHHRKSRTES RSDGILSEVN SPRTYTRRSS PLNSPFGSND SLQKDADHLR
IHSPYESPPK NGLDKTFSDV VLYAVPPKGF FPSDSASGSV HSLSSGGSDS VHGHMKAVAM
DAFRVSLSSA VSSSSQGSGH DDGEAMGDVF IWGEGTGDGV LGGGTHRVGS FFGVKMDSLL
PKALESAVVL DVQNIACGGQ HAALVTKQGE IFSWGEESGG RLGHGVDSDV LHPQLIEALS
NTNIEFVACG EYHTCAVTLS GDLYTWGDGT YNFGLLGHGN EVSHWVPKRV NGPLEGIHVS
SISCGPWHTA VVSSAGQLFT FGDGTFGVLG HGDRKSISLP REVESLKGLR TVQAACGVWH
TAAVVEVMVG NSSSSNCSSG KLFTWGDGDK GRLGHGDKEA KLVPTCVSAL VEPNFCQVAC
GHSLTIARTT SGHVYTMGSP VYGQLGNPQS DGKLPARVEG KLSRSSVEEI ACGAYHVAVL
TSKTEVYTWG KGANGRLGHG DTDDKNLPSL VEALKDKQVK SIACGTNFTA AICLHKWVSG
VDQSMCSGCR LPLNFKRKRH NCYNCGLVYC HSCSSKKSLK ASMAPNPNKA YRVCDNCYNK
LRKAMETDAS SQSSVSRRGS VNQGPSEFID KDEKLDTRSR AQLARFSSME SLKQAESRSK
RNKKLEFNSS RVSPVPNGGS QWGAFNISKS FNPMFASSKK FFSASVPGSR IISRATSPIS
RRPSPPRSTT PTPTLGGLTS PKIVVDDAKR TNESLSQEVL KLRAQVENLS HKTQLQEVEL
ERITERLKEA RAIAGEETAK CKAAKEVIKS LTAQLKDMAE RLPVGAARSI KSPLFASFGS
SPTSNDVSTI DCLNGQSTCQ EPDANGLHIQ LLSNVSSTIS NRGAGHNNQG HLEATIKNGS
RNKEAEWRHE AEWVEQDEPG VYITLTSLPG GIKDLKRVRF SRKRFSEKQA EQWWAENRAR
VYEKYNVRMI DKSSVGVGSE DLAH
//
