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Database: UniProt
Entry: A0A2K2CW65_BRADI
LinkDB: A0A2K2CW65_BRADI
Original site: A0A2K2CW65_BRADI 
ID   A0A2K2CW65_BRADI        Unreviewed;       960 AA.
AC   A0A2K2CW65;
DT   28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT   28-MAR-2018, sequence version 1.
DT   08-NOV-2023, entry version 28.
DE   RecName: Full=USP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   Name=100841955 {ECO:0000313|EnsemblPlants:PNT66262};
GN   ORFNames=BRADI_3g09260v3 {ECO:0000313|EMBL:PNT66262.1};
OS   Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX   NCBI_TaxID=15368 {ECO:0000313|EMBL:PNT66262.1};
RN   [1] {ECO:0000313|EMBL:PNT66262.1, ECO:0000313|EnsemblPlants:PNT66262}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Bd21 {ECO:0000313|EMBL:PNT66262.1,
RC   ECO:0000313|EnsemblPlants:PNT66262};
RX   PubMed=20148030; DOI=10.1038/nature08747;
RG   International Brachypodium Initiative;
RT   "Genome sequencing and analysis of the model grass Brachypodium
RT   distachyon.";
RL   Nature 463:763-768(2010).
RN   [2] {ECO:0000313|EMBL:PNT66262.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Bd21 {ECO:0000313|EMBL:PNT66262.1};
RG   The International Brachypodium Initiative;
RA   Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA   Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA   Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT   "WGS assembly of Brachypodium distachyon.";
RL   Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EnsemblPlants:PNT66262}
RP   IDENTIFICATION.
RC   STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:PNT66262};
RG   EnsemblPlants;
RL   Submitted (AUG-2018) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the peptidase C19 family.
CC       {ECO:0000256|ARBA:ARBA00009085}.
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DR   EMBL; CM000882; PNT66262.1; -; Genomic_DNA.
DR   EMBL; CM000882; PNT66263.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2K2CW65; -.
DR   EnsemblPlants; PNT66262; PNT66262; BRADI_3g09260v3.
DR   EnsemblPlants; PNT66263; PNT66263; BRADI_3g09260v3.
DR   Gramene; PNT66262; PNT66262; BRADI_3g09260v3.
DR   Gramene; PNT66263; PNT66263; BRADI_3g09260v3.
DR   Proteomes; UP000008810; Chromosome 3.
DR   ExpressionAtlas; A0A2K2CW65; baseline.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd02661; Peptidase_C19E; 1.
DR   Gene3D; 6.10.140.2220; -; 1.
DR   Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR001394; Peptidase_C19_UCH.
DR   InterPro; IPR018200; USP_CS.
DR   InterPro; IPR028889; USP_dom.
DR   InterPro; IPR002893; Znf_MYND.
DR   PANTHER; PTHR24006; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR   PANTHER; PTHR24006:SF685; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15; 1.
DR   Pfam; PF00443; UCH; 1.
DR   Pfam; PF01753; zf-MYND; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
DR   SUPFAM; SSF144232; HIT/MYND zinc finger-like; 1.
DR   PROSITE; PS00972; USP_1; 1.
DR   PROSITE; PS50235; USP_3; 1.
DR   PROSITE; PS50865; ZF_MYND_2; 1.
PE   3: Inferred from homology;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00134}.
FT   TRANSMEM        7..27
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          88..125
FT                   /note="MYND-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50865"
FT   DOMAIN          425..730
FT                   /note="USP"
FT                   /evidence="ECO:0000259|PROSITE:PS50235"
FT   REGION          184..273
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          304..377
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        184..214
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        228..263
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        304..318
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        346..360
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        361..377
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   960 AA;  106377 MW;  C1638F4E83C222F3 CRC64;
     MLQPREADVP ALFVVFIVLP VIAYFLLGRW HDAVSKKARV GVLAQKAAEE DFKVETMACP
     DVVLPGPSLR PMPYLRSVPS FRPEYHECAT CHGPAKTRCS RCKSVRYCSG KCQIIHWRQG
     HKQTCQLWHV NGGSNSGLLP NTEGSEQMPF LSNLNSPLPG GDNHLHDLNF DTVSEPSFAT
     TDSYTLGTDA FPTEKSNQNP HSSENGASVA SSEKCNHSVD DETRSSEIAS ANKVSNNSFG
     CSDGKNGNPD STYLHNGMVQ HPNSCAPETR KRPKASITVY EPDMGVYLTS DMISSCEGPY
     ASATESLQRS NSSGKATGKG NMVHKKPPYP SGKVASSQKS QEVSTSYQYD DHEKNPYSKS
     DQRFTKPSVS TSNNLQGSNG TSKLGISKVD VLRKPSKFLK TSLVLFRYED LVKFFQYEVR
     GISPRGLFNC GNSCYANAVL QCLMCTKPLM IYLLLRLHSK DCSKNGCLMC ELEQYASTLR
     ESGGPVSPSR ILSNLRNIGC RLGGGSQEDA HEFLRHLVMS MQAACLDGLG GEKHVEPSLQ
     ETTLIQQMFG GRLKSKVKCL RCLHESERYE NIMDLTLEIH GWVESLQDAL TQFTAPEDLD
     GENMYKCGRC CAYVKARKQL SVHEVPNILT VVLKRFQTGK YGKINKCVTF PEMLDMVPFV
     TGAGDHPPLY FLYAVVVHVD TENASFSGHY ISYVKDMQGT WLRIDDSEVK AVSPNQVMSE
     GAYMLFYLRS FPRPPRIYIE KGLLPVTSSA KRHSSKSSKG SKEEQKLAES LFASNDKICG
     VYDFRPDEEG YRQDQHAELR PRNFYHTDDA FAESVSTDFS DATSSEWSLF TSSDESSFTT
     ESTRDSFSVV DYSDNAGLDP ITSIFGPYYA PDHPPGNFAS CTRFSPSNPE TRYFSESTGF
     VSDSSSLPTH PYGNVHRGRY PDRACASSAE PLASANQRSV YGRYGHSRDG FVQTSGFCHM
//
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