ID A0A2K3JR95_TRIPR Unreviewed; 371 AA.
AC A0A2K3JR95;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE SubName: Full=Ribonuclease H {ECO:0000313|EMBL:PNX56550.1};
DE Flags: Fragment;
GN ORFNames=L195_g049938 {ECO:0000313|EMBL:PNX56550.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNX56550.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNX56550.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX56550.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNX56550.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX56550.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNX56550.1}.
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DR EMBL; ASHM01074762; PNX56550.1; -; Genomic_DNA.
DR STRING; 57577.A0A2K3JR95; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3JR95; baseline.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR47074; BNAC02G40300D PROTEIN; 1.
DR PANTHER; PTHR47074:SF48; RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 44..134
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 261..370
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:PNX56550.1"
FT NON_TER 371
FT /evidence="ECO:0000313|EMBL:PNX56550.1"
SQ SEQUENCE 371 AA; 42059 MW; 65C629DED87A7C53 CRC64;
KRWDIHKIRS LFSEAVAENI IKTPLFEEVK EDXVVWQYEN HGVYTVKSGY RHYIKNKSVN
NNYTLEGDWG ALWRSRAPPK TKHLLWRVCR DCLPTRLRLR ERYVPCPSEC ALCVNNTEDD
WHVFFGCSES RQVWNEAGLG GVIDPRIRQY DNVKAVFFDI CRNETDDIAG IVATIAWSIW
HNRNNWVWNG VKDTAKGVAT TAAHLIGEWR AVHVIQQQHS ATAAVLTQSR ISDTGAASSP
PIIAADPLRW QRPRDGWWKC NVDASFSQAS GQTGWGWCIR NSQGVFVAAG TNMSMHKLAI
VEGEAMAILE AMRQATSRGW SNIVFESDSK VVVDAIQANH HGIAELSSII LSIKLLLQCN
SNFEIKFTKR Q
//
