ID A0A2K3LHT8_TRIPR Unreviewed; 456 AA.
AC A0A2K3LHT8;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
DE Flags: Fragment;
GN ORFNames=L195_g034067 {ECO:0000313|EMBL:PNX78092.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNX78092.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNX78092.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX78092.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNX78092.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX78092.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNX78092.1}.
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DR EMBL; ASHM01033481; PNX78092.1; -; Genomic_DNA.
DR STRING; 57577.A0A2K3LHT8; -.
DR EnsemblPlants; Tp57577_TGAC_v2_mRNA14574; Tp57577_TGAC_v2_mRNA14574; Tp57577_TGAC_v2_gene14102.
DR Gramene; Tp57577_TGAC_v2_mRNA14574; Tp57577_TGAC_v2_mRNA14574; Tp57577_TGAC_v2_gene14102.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR029472; Copia-like_N.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR47481; -; 1.
DR PANTHER; PTHR47481:SF19; GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 261..276
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 236..257
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 275..301
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..257
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 456
FT /evidence="ECO:0000313|EMBL:PNX78092.1"
SQ SEQUENCE 456 AA; 50929 MW; D1E37EE7CAEB27AA CRC64;
MSSTSAAPNA PLVEFNLSSN FPIKLNGTNY PTWHKLFMNL LTANNLVGYV TGSTPCPSPT
TTGEKDAQTE NPNYLHWCRQ DSHITIALMA SCGQEAQIVI ASATSSADAW NKLKKAYSNR
SRARIMSLKE RLATIFKGSS SVHDYLRTIR SIGDELALIG HPVDDLDLVI AAVNGLGPTF
REFSTSIRTR DTPIQFDELF DKLVDFEIYL QRDEQHTLSA PITANMAHRS NHHYNRSNQH
QSRFRRPYSS TSNNTRPGSV CQYCDKRGHI AKDCNELRGY PSKNSAKPRA HHVQKQNDRE
SSWLLDSGAS HHVTNDLANL TLAKEVTEPD QLFVADGKXL SILHNGNTTI STSSKPLALC
DVLHVPNVSQ NLISVSQLCK ANDVSIEFFP WHFEIKDLKT GRMLLQGNNE GNLYTLPSSH
NSAQLHHVVK PPSTELWHNR LGHPDSRILR CVLKSH
//
