ID A0A2K3M3K1_TRIPR Unreviewed; 337 AA.
AC A0A2K3M3K1;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0000259|Pfam:PF14244};
DE Flags: Fragment;
GN ORFNames=L195_g041436 {ECO:0000313|EMBL:PNX85368.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNX85368.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNX85368.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX85368.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNX85368.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX85368.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNX85368.1}.
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DR EMBL; ASHM01048575; PNX85368.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3M3K1; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR InterPro; IPR029472; Copia-like_N.
DR PANTHER; PTHR37610; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37610:SF105; COPIA-LIKE POLYPROTEIN_RETROTRANSPOSON; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 20..63
FT /note="Retrotransposon Copia-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF14244"
FT REGION 231..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..259
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT UNSURE 35
FT /note="D or N"
FT /evidence="ECO:0000313|EMBL:PNX85368.1"
FT NON_TER 337
FT /evidence="ECO:0000313|EMBL:PNX85368.1"
SQ SEQUENCE 337 AA; 37911 MW; 94FB7CB8E7AD3DF7 CRC64;
MDANTFTDFA TNPSNPYYLH PNENPSLILV TPLLDSKNYS SWSRAMKVAL ISKNKLRIVD
GSFLCPSPTH VLYEQWIRCN NMVLSWLQRS ISESISKSIL WIDKASSVWT NLELRFSQGD
IFRIADIQDD LTRFQQGTLD ISNYYTQLTA MWEEIDNFRP TKNCTCAIPC TCGAASDFQK
YKEQDKVIKF LKGLNEQYSH VRSHIMLIEP LPNLSKTFSM VLGQERQLNL PILPDPSTEK
QPLAMQVQSS SSNGGGRGKS QYPNKGRGRA NFSGGRGGLG GGRDTGGCTH CGKNNHIVQN
CFVKYGYPPG FQQKNNKAYV NLAENFAYEQ NSTQETT
//
