ID A0A2K3MF98_TRIPR Unreviewed; 347 AA.
AC A0A2K3MF98;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=L195_g045565 {ECO:0000313|EMBL:PNX89446.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNX89446.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNX89446.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX89446.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNX89446.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNX89446.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNX89446.1}.
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DR EMBL; ASHM01059804; PNX89446.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3MF98; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR InterPro; IPR029472; Copia-like_N.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR PANTHER; PTHR37610; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37610:SF79; RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 16..63
FT /note="Retrotransposon Copia-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF14244"
FT DOMAIN 102..185
FT /note="Retrotransposon gag"
FT /evidence="ECO:0000259|Pfam:PF03732"
FT REGION 221..242
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 280..320
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 223..242
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 282..320
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 347
FT /evidence="ECO:0000313|EMBL:PNX89446.1"
SQ SEQUENCE 347 AA; 38852 MW; 41C0806B81F13010 CRC64;
MAANNVPNQA SPYFLHSSDQ PGQLLVTQLL DGDNYPTWSR AITMALEAKN KLGFIDGTIL
KPEPNNPNFS NWVRCNSMVQ SWLVHSTIPT IANSILWIKS ARDIWLDLLT RFNQKNAPRI
FEIRRAISNL SQGTSSIAAY YTQLKAYRDE LDSYRTVPTC VCGVIPNFND IYATEHLMDF
LQGLNDSFAS VRSQILLMDP LPSVTKAYSL FLQEERQRSL SDSRSITLEQ SDMAAQHSTT
SRDGNNKPIY YCSHCDIEGH SDSRCYEKIG YPSWWKHNLG PNKNRRGTSS RGGRGSRSAV
SRNHPTVAAV ASPSESQPPV HLSQTQINQL LSLLKITGND QPLANFA
//
