ID   A0A2K3MTU0_TRIPR        Unreviewed;       836 AA.
AC   A0A2K3MTU0;
DT   28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT   28-MAR-2018, sequence version 1.
DT   27-MAR-2024, entry version 18.
DE   RecName: Full=Retrotransposon gag domain-containing protein {ECO:0000259|Pfam:PF03732};
GN   ORFNames=L195_g017423 {ECO:0000313|EMBL:PNX94251.1};
OS   Trifolium pratense (Red clover).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX   NCBI_TaxID=57577 {ECO:0000313|EMBL:PNX94251.1, ECO:0000313|Proteomes:UP000236291};
RN   [1] {ECO:0000313|EMBL:PNX94251.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNX94251.1};
RX   PubMed=24500806; DOI=10.3732/ajb.1300340;
RA   Istvanek J., Jaros M., Krenek A., Repkova J.;
RT   "Genome assembly and annotation for red clover (Trifolium pratense;
RT   Fabaceae).";
RL   Am. J. Bot. 101:327-337(2014).
RN   [2] {ECO:0000313|EMBL:PNX94251.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNX94251.1};
RX   PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA   Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT   "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT   (Trifolium pratense) Breeding.";
RL   Front. Plant Sci. 8:367-367(2017).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PNX94251.1}.
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DR   EMBL; ASHM01012301; PNX94251.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2K3MTU0; -.
DR   Proteomes; UP000236291; Unassembled WGS sequence.
DR   ExpressionAtlas; A0A2K3MTU0; baseline.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   PANTHER; PTHR33223; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR33223:SF8; OS04G0172440 PROTEIN; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT   DOMAIN          174..264
FT                   /note="Retrotransposon gag"
FT                   /evidence="ECO:0000259|Pfam:PF03732"
FT   REGION          1..106
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          302..347
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          417..447
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          632..685
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..46
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        59..87
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        317..336
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        417..445
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        660..685
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   836 AA;  94054 MW;  7AB68E25D64C8FCB CRC64;
     MIQEQKELIR EQDRGLKATE RINSRRRLDG PNRLLQASKK RARTPPRQEP ASVTTKRGRR
     FSIFDRLGEK LTITRGGRRG GHDSPPSPRF KRRRHSPSPF PRENIYPDYE AYDSDEDESC
     GPLSLEILNA PLPPGLERPP KLAKYDGKGD PDEHISVFNI QLDYLRVSGD IKCRLFSTTL
     TKKALDWYKT LPRDSIHSWS QLSKQFRSRF TASRRPPKTI ASLKAIVQGR EETLRAYIER
     FSSEATQVTA EDSMKRYLLE RGLRRPSELA RSIGIEPPSS FNRLLERANA YIKYEEKEAL
     ANTHASSRAE SSSQHNRGPP RGREKRHDER PREKGHGPQG NFTSYTPLTA SREHIFAATG
     SSVFRDGGIR IPKQTPAKPN ADKSKYCKFH KTHGHMTEDC ISLKDAIEVL IRDGPLKKWS
     RSNDTPRDKE AHPPKREDKD DDEASPMQVA MSITRPEDFI LTEELAARLN AWENFPRTTV
     ISGGGFSTLT IGSVKRKFEE LLAASSDISA TIDKLRKSIP IAFYPEELPG GSPNSAIPLL
     IRASMANFDV HRILVDEGSS CDIIYTSLFK VLGLEREHLS PTSLADLMVV PSTIHLKMKY
     YTREGTVATL HGDIAAARRC FEAASKGHTT INRVSAKGRA SEKKVDETKP APRTVNMVDL
     DSRVSKKESK EEKKLRKEGE ENREASRKIF RPIPDENFEL IPLGEDANKS VKIRADLPPL
     VRKQLKSCLR ENADLFAWSV AEMPGLDPDT ACHQLATDPA ARAVVQRRRK QSPEKAEAAE
     KAIKDLLEVN FISEARYTTW LSNVVLVKKS NGNGECALTT PISIGLAPKM LILCLV
//