ID A0A2K3ND85_TRIPR Unreviewed; 390 AA.
AC A0A2K3ND85;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=Helicase SKI2W {ECO:0000313|EMBL:PNY00985.1};
GN ORFNames=L195_g024272 {ECO:0000313|EMBL:PNY00985.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY00985.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY00985.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY00985.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY00985.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY00985.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY00985.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; ASHM01019567; PNY00985.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3ND85; -.
DR STRING; 57577.A0A2K3ND85; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3ND85; baseline.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0016070; P:RNA metabolic process; IEA:UniProt.
DR Gene3D; 1.10.3380.30; -; 1.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF24; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH11; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR SMART; SM01142; DSHCT; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:PNY00985.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 209..387
FT /note="ATP-dependent RNA helicase Ski2/MTR4 C-terminal"
FT /evidence="ECO:0000259|SMART:SM01142"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 7..21
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 390 AA; 43581 MW; 1194E0E4B038AB3B CRC64;
MPFPVENASS GGNSQDKSSK FDQGFFVMPK SRRGLVDEYS TSVSARKGKG VINIKLPHRG
SACGMSYEVR EVDIKEFLCI CSSKIKIDQV GLLEDVSSSV YAKTVQLLQD LKSDGNKYPP
ALDPVKDLKL KEATLVETYR KWTKLLEKMS QNQCNGCIKL ADHLKLAKEI KAHKEEVCAL
QFQMSDEALQ QMPDFQGRID VLKEIGCIDE DLVVQMKGRV ACEMNSGEEL ICTECLFENQ
LDELEPEEVV ALMSAFVFQQ KNTSEPSLTP RLSDAKNRLY KTAIRLGELQ AQFNLPISPE
EYAQENLKFG LVEVVYEWAK GTPFAEICEL TDVPEGLIVR TIVRLDETCR EFKNSAAIMG
NSALCKKMEI ASNAIKRDIV FAASLYVTGV
//
