ID A0A2K3NHW6_TRIPR Unreviewed; 665 AA.
AC A0A2K3NHW6;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE SubName: Full=XH/XS domain protein {ECO:0000313|EMBL:PNY02603.1};
DE Flags: Fragment;
GN ORFNames=L195_g025915 {ECO:0000313|EMBL:PNY02603.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY02603.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY02603.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY02603.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY02603.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY02603.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY02603.1}.
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DR EMBL; ASHM01021562; PNY02603.1; -; Genomic_DNA.
DR STRING; 57577.A0A2K3NHW6; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF65; PROTEIN INVOLVED IN DE NOVO 2-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 40..83
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 112..224
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 532..660
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT COILED 348..382
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 408..526
FT /evidence="ECO:0000256|SAM:Coils"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:PNY02603.1"
SQ SEQUENCE 665 AA; 76808 MW; 7007B5D1CBBD166E CRC64;
SSEEDTDISD SEISEYEDKC YEELKNGSQN VKTSDEKFTC PYCPKKRKRD YMYKELLQHA
SGVGQSSSQK RKAREKATHL ALVKYLENDL MNIDETPSES ADKSDTPIDS GEQFVWPWIG
IVVNIPTSRT PDGQTVGASG SKLRDEYKRR GFNPFRVNPL WNFRGHTGIA LVEFNKNWPG
FDNALAFEKA YALEHHGKKD WLIIASSQQK SGLYAWVARA DDYKANNIIG EHLRKMADLK
TIPELMEEEA RKQDKLVSNL TNIIQVKNQH LSEIKARCTE TMVKINSAMT EKDLLIQSYN
EVLGVQLCSA TCNLCFGYTY NCQYVVVSGP KEIKKIQSGA KDHFQRIFNG HEKLKMQLET
QKKELESRRL ELEKREAHNE SERKKLAEEI RENATKNSSL QMASLEQLKA GENVMKLAED
QKKEKEKLHA KIIQLERXLD MKQKLELEIQ QLKGSLSVLK HIEDDDDEEV LKKVDDLHEG
LREKEQTLQD LEALNQTLII KERKSNDELQ EARKELINSI KEIETRVHIG VKRMGELDTG
PFHEAMKKIY NKEEAEDKAT ELGSLWEEYL KDPDWHPFKV VMVDGKEKEI IKDDDEKLNG
LRKELGEKAY NAVVAALTEI NQYNPSGRYV TSELWNYKAG RRATLQEGVQ FLLDQWRRKR
EMLGY
//
