ID A0A2K3NQ17_TRIPR Unreviewed; 1720 AA.
AC A0A2K3NQ17;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 08-NOV-2023, entry version 24.
DE SubName: Full=Ubiquitin carboxyl-terminal hydrolase-like protein {ECO:0000313|EMBL:PNY05121.1};
GN ORFNames=L195_g001560 {ECO:0000313|EMBL:PNY05121.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY05121.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY05121.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY05121.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY05121.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY05121.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY05121.1}.
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DR EMBL; ASHM01000637; PNY05121.1; -; Genomic_DNA.
DR STRING; 57577.A0A2K3NQ17; -.
DR EnsemblPlants; Tp57577_TGAC_v2_mRNA39685; Tp57577_TGAC_v2_mRNA39685; Tp57577_TGAC_v2_gene38388.
DR Gramene; Tp57577_TGAC_v2_mRNA39685; Tp57577_TGAC_v2_mRNA39685; Tp57577_TGAC_v2_gene38388.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR CDD; cd02257; Peptidase_C19; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR006866; DUF627_N.
DR InterPro; IPR006865; DUF629.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR22975:SF9; ECHINUS SPLICE FORM 3; 1.
DR PANTHER; PTHR22975; UBIQUITIN SPECIFIC PROTEINASE; 1.
DR Pfam; PF04781; DUF627; 1.
DR Pfam; PF04780; DUF629; 1.
DR Pfam; PF00443; UCH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR PROSITE; PS50235; USP_3; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Hydrolase {ECO:0000313|EMBL:PNY05121.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 1313..1641
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 292..334
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 962..1000
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1113..1189
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 196..223
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1027..1073
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 303..334
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1123..1149
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1720 AA; 194306 MW; 3C34BE9D5BF206D2 CRC64;
MGHKKRNSVP RSKLSPAASP VAQPPIGGAA NGSTSPDADS IILFDQNLTN PSKIELVSPQ
SEGSDFSAIK VECERALTTF RRGNHNRAMK LMKELCLKED GSPYSAFVYR IHGFICFKVA
SIITDCSAKQ RHLKHAVESA RRAVELSPNS IEYAHFHATV MLEAATEGKD YEDVVHECER
GLAIENPNDP AKETLQDESE QKVSSLEDRI LHVQAELRQL IQKSNIASLS SWMKNLSNGE
ERFRLIPIRR ATEDPMEVRL VQTRRPNEIK KVTKTPEERR KEIEVRVAAA RLLQQQSESP
QSPNEGDRDD RALDVSSGSN QRIGERRRHV RNNGSSAERR KWVLTYWDSL SMDVKKDWLR
IKISDIMSHF GSTKDTLPKD VLSEALFYAE ANKTWKFWNC GICAEKFPNQ EFHRQHVMHV
HLQTLSPKMQ RLLPQHVDNE WIEMILNCSW KPLDVSAAVK MIDYKAKLKG PSLPEDYLTQ
DYDDCFKDDS SSSYHEKESL GYSIGNCTTE SSKYYKNAES DAKEGIEDQQ FMANPVTDCW
PVSDDKERAK LLEKIHGVFE ILIRHKCLAA SHLHKVIQFS MGEIQGLAAG SELLKHDVDQ
TPMCICFLGA SQLKKILQFL QEMSHACGLG RYSDKSSSPK NDLNDISQGP EIKDKIVLNG
DASCLLLDEC LLPTQVTPGT PQEAVFEDMV TPSSPDGISD NSGAWLSWLY SSRPIGDQLT
SWIRTKEDKT CQGQEMVRTL DKEFYQLHSL CQKKCDRISY EEALQTIEDL CLEEGKKREN
VGEFVQRSYE SVLKRRREEL AESENEMMYA GNRFEMDCIS NVLQEAEAMN VNQFGYEETY
TGVTSQLCDL ESGEDDEWRM KDCLHQMDGC IEIAIQKLKE HSSIEISKVD AEIIKCVSEV
QQLELKLGHI SANDYRAIIV PLVKSYLKTL LEDLAEKDAR EKSDAAGEAF LAELALDSKK
ISKGGNENTR HVEKTKDKKK NKDHRKTRDL KGTSGSMYPL LQSTTLDSDL VSPDSDFQDH
EVVSMNEDDL EHHEEEFRRK IELEEEEKKL EETLELQRRI ENEAKQKHLA EQQKKLSGTC
VEEVTDKRQD CQLKPVADGS DAQEHRRLPM QEQLAKENGC PNNLDVVLNT TSNGSMMPTK
SSADSDSPKI NHSHQSKVKQ DIPNGIVPEN GLPLPDRRAG KKHKRNKNSS KMVDGKLEYV
SLENENIEDA HNDYHLREQS KFHNNQEAKH LLENNGAKVM KESPVEDEEE ERFQADLKMA
VRQSLDTYQA RGNLPLASSM RIPQRSSSQV DHLGIASLED STPDVNGASL LGTGLRNEVG
EYNCFLNVII QSLWHLRRFR VEFLARSRSE HDHVGNPCVV CALYEIFTAL DLASKDSRRE
AVAPTSLRIA LSNLYPHSNF FQEAQMNDAS EVLAVIFDCL HQSFTRGSGV SDAKTVESKV
MGSWDCAAGS CIAHSLFGMD IFEQMNCYHC GLESRHLKYT SFFHNINANA LRTMKATFPE
SSLDKLLNLV ERNHQLACDQ EVGGCGKLNH IHHFLSTPPH VFMTVLGWQN TCESADDITA
TLAALSTKIN ISVLYRGLDP KSTHNLVSVV CYYGQHYHCF AYSHDHGQWI MYDDKTVKII
GGWADVLTMC ERGHLQPQEQ ILRGSGGDDD EYIFSVAGWL GRKQRVVLVL LEELQVDQQS
CQLVATTAEN GVSNTDLLDN FSPFQDTCDG KCCMAGFVPQ
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