ID A0A2K3NVU5_TRIPR Unreviewed; 837 AA.
AC A0A2K3NVU5;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Lysine-specific demethylase 5B {ECO:0000313|EMBL:PNY07170.1};
GN ORFNames=L195_g003657 {ECO:0000313|EMBL:PNY07170.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY07170.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY07170.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY07170.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY07170.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY07170.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY07170.1}.
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DR EMBL; ASHM01001728; PNY07170.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3NVU5; -.
DR STRING; 57577.A0A2K3NVU5; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3NVU5; baseline.
DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF33; TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN _ ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Methyltransferase {ECO:0000313|EMBL:PNY07170.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000313|EMBL:PNY07170.1}.
FT DOMAIN 102..143
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 249..419
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 676..699
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 809..837
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 837 AA; 94696 MW; CE4305BA867A916A CRC64;
MLCFDIPLAH FLMNYRGSVP VEGGRVRLSE EARNGLEVLK RKRLQRAQAS VANMTNRSGG
DALRASAPCG PRLHGNPDVF FKRKVAKFDT SDLEWTDKIP ECPVYSPTKE EFEDPLVYLQ
KIAPEASKYG ICKIISPLSA SVPAGVVLMK EKAGFKFTTR VQPLRLAEWD TEDKVTFFMS
GRNYTFRDYE KMANKVFARR YCSVGCLPAT YLEKEFWHEI GCGKMDTVEY ACDVDGSAFS
SSPTDQLGNS KWNLKKLSRL PKSTLRLLET SIPGVTEPML YIGMLFSMFA WHVEDHYLYS
INYQHCGASK TWYGIPGHAA LEFERVVREH VYSTDILSSD GEDGAFDVLL GKTTLFPPNI
LLEHKVPVYK AVQKPGEFVI TFPRAYHAGF SHGFNCGEAV NFALGDWFPL GAIASRRYAL
LNRVPLLPHE ELLCKEAMLI HTSLELEDSD FPSSDLLSHN RTKISFINFL CKRDCYIAYV
DCSCHMHPVC LRHDVKSLDF TCGRKYTLYL REDIADMEAA AKMFEQEDRI LDEIRKQSKS
DQDMYSYPLS DMFQRAEANG YERYCELKLD STIEFYTTPE QSTNNQECGT QNQLVLGHCS
EVHTPEASEI SFSAASTLCS LSEPLDCSSA PKNAEEQANL KMGIIDFEEL GETVSNSACK
SSLSPALYHE SSAELHDLQK PDMKPIVDND SDDSDSGIFR VKRPSSLKAE KRNAKVAALK
HSEQQGLKRL KKVPPEGKSR QQMNFRTSEL SYKQNPVSHK VDIEISSKDR FARGNGAPIS
VRYKKSSNED VSIHMQQDHH RRERFQQTYR EAPSIETGPK RLKVRGPSFI GLESRLN
//
