ID   A0A2K3PDY6_TRIPR        Unreviewed;       791 AA.
AC   A0A2K3PDY6;
DT   28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT   28-MAR-2018, sequence version 1.
DT   27-MAR-2024, entry version 15.
DE   RecName: Full=Retrotransposon gag domain-containing protein {ECO:0000259|Pfam:PF03732};
GN   ORFNames=L195_g010162 {ECO:0000313|EMBL:PNY13506.1};
OS   Trifolium pratense (Red clover).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX   NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY13506.1, ECO:0000313|Proteomes:UP000236291};
RN   [1] {ECO:0000313|EMBL:PNY13506.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNY13506.1};
RX   PubMed=24500806; DOI=10.3732/ajb.1300340;
RA   Istvanek J., Jaros M., Krenek A., Repkova J.;
RT   "Genome assembly and annotation for red clover (Trifolium pratense;
RT   Fabaceae).";
RL   Am. J. Bot. 101:327-337(2014).
RN   [2] {ECO:0000313|EMBL:PNY13506.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNY13506.1};
RX   PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA   Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT   "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT   (Trifolium pratense) Breeding.";
RL   Front. Plant Sci. 8:367-367(2017).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PNY13506.1}.
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DR   EMBL; ASHM01006120; PNY13506.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2K3PDY6; -.
DR   Proteomes; UP000236291; Unassembled WGS sequence.
DR   CDD; cd00303; retropepsin_like; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   PANTHER; PTHR33067; ASP_PROTEASE DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR   PANTHER; PTHR33067:SF38; TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR CCHC(ZN) FAMILY; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT   DOMAIN          87..179
FT                   /note="Retrotransposon gag"
FT                   /evidence="ECO:0000259|Pfam:PF03732"
FT   REGION          316..351
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          207..253
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          278..315
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   791 AA;  91399 MW;  C3654D9BA2CE1676 CRC64;
     MAGENSTRNV MGNYFKKTDT EEVTLGFQPA NPTTLEVKTV VMNELRNNQF KGDSSQDPWE
     HLVKFNEICA LQKRPEHTTD DQKKLFMFAY SLTQQAKDWL YCLPTKTIQT WKELEGKFLD
     RFFTEDQFKE RKAELMNFQQ HKKECLYQSH ERFKLLKRRC PNHQICAAEL MYIFINGMKQ
     KQRMFLDASA GGTIQNKTPA EVEELIEKMC ENKYNKMEDE EETLQDQLEE RKRKEHIEKI
     NKLQREEDSK KQQESYTTQI TNLESVIVQL AKNMGEHIQS SNAQIQHLIN QVSDLKDEQC
     KAIELRNRLV DITERPKKSK KAKDNGTDHS QQEVPAEEAV TEEEREPGTE PEVRIEINQP
     VFDNNQTPSQ STPILNTRLP EIFAPYPTKD GKKEKEKVQN RQFEGYLKQM EINIPLGDML
     RISPPFHKYV KNVVAGKIKL QDKENIELTA ECSAIFQKTL PRKCKDPGSF TISCTIGGVE
     IGRALCDLGA SVNLMPLSIM KKLNCGEAKP TRMTLILADR TRVYPHGILE DVLVRVDDTI
     FPADFVIMDI EEDDEAPILL GRPFLTTFKA LIDMETREIK FRVDGNEVTF NINNMVPQKK
     EKPECYKVDI VETLVKEQLE TPAPGIQRAI LQSLKAEEEG MEEETNLSVR WLNREAHCKY
     PQKYKPLEFD PNEKPKPLEL KELPPYLKYI FLGEGKTKPA IISNSLPPER EERLIKMEEE
     YKPVVQPQRR LNPVMNEVVR KEVNKLLAAG MIYPISDSPW VSPVHVVPKK GGITVMKNEK
     NELIPTRNVT G
//