ID A0A2K3PKX8_TRIPR Unreviewed; 1195 AA.
AC A0A2K3PKX8;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 15.
DE SubName: Full=Ribonuclease H {ECO:0000313|EMBL:PNY15946.1};
DE Flags: Fragment;
GN ORFNames=L195_g012654 {ECO:0000313|EMBL:PNY15946.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY15946.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY15946.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY15946.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY15946.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY15946.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY15946.1}.
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DR EMBL; ASHM01008102; PNY15946.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3PKX8; -.
DR STRING; 57577.A0A2K3PKX8; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3PKX8; baseline.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46890; NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED; 1.
DR PANTHER; PTHR46890:SF45; RNA BINDING _ RNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF03372; Exo_endo_phos; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF56219; DNase I-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000236291}.
FT DOMAIN 446..727
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT NON_TER 1195
FT /evidence="ECO:0000313|EMBL:PNY15946.1"
SQ SEQUENCE 1195 AA; 139164 MW; B505D698CD766B75 CRC64;
METRTDAENL RRTFQLLGFD GFQFSNANGY SGGIIVAWKG SIVDVEVLMR HFQFLHMRVT
FKGGRDWYFT SIYASPQEEG RKVLWDELRN IANLMQGNWL LAGDFNDISH ISEKKGGIPA
NQGRCDRFMD RMNACHLMDC GSIGSRFTWR GPIFRGGERI FERLDRALVN DNWRLAFPHA
VVKVLARIDF SDHHPLLIYP FGIDNPRRLK HFKFESAWLL EDSFMDMLRA SWKDYDNICN
QLVDVAQEMG KWKHLSFDRV LGQKRELIAR IGGIQRRVYE GCSNKYLQRL EYKLQRELEH
ILKQEELMWY QRSRARWLAD GDRNTKYYHL KAVTRRRQNK VLMLRDADGS WVEDRDKLKE
LANNFYKSLF TTNDSADNWF QTALSYPELT AEEFQHIRRD IDDEEVRMAV FSMHPWKAPG
PDGFPAGFYQ KAWEIVGMSV CDFVKKVWAN PLLLNDVNVT DICLIPKIDQ PEFINQFRPI
SLCNTVYKIV SKVMTNRIKD SISKIISPNQ TGFIPRRSIH ENIIVAQEMA HSMCKMNGKV
GFFVIKVDLS KAYDKLNWKF IHHVLQETGY PVEWINVVMA SVTSVRTNVK WNGERAEYFA
PQRGIRQGDP ISPYLFVLCL DKLSHLISQA VHEGKWKPMK AGRSGPLISH LMFADDLLLF
AQASEDQMRE VMHILDIFCS MSGQEVSQEK TSIMFSKNVQ QHTRDQLANI SGFRVTQSMG
KYLGVPLVGR APRKSDYNYL LAQVKSKLSS WKAKQLSLAG RITLSKAIIE AIPIYPMMTA
NIPKSCLQQL QKMQRSFIWG EAENERRYHA VSWDTITLPK SLGGLGIRRL HNMNKACLMK
LGWSMKRGDS ALWIDVLKGK YAREHPNLDS IVAKNHDSSL WKSLSAMWKE LDEFTVWSVG
NGELVQAWKD RWIFVDKSID ELQVPVPENL NDMRVKDLVD EHGQWNYQML QSWLPHTIVR
RLWAILPPTD DNGMDQRGWK GDKNGEFSVS SAYLMICNFT ENFDDTIWAK IWRITVAERI
RSFIWLVKHN RILTNYRKSK MNLGGPWCNH CVDEIEDVLH ILRDCPLAKA IWCNVLRMEV
RTTFFNLQHQ EWITFNITKE LGKDHVTVPW NAFWATSCHM LWKWRNSEEH DATFMRPVQP
WKEVYKWTTY YMNAMQNKVM HNSNSTASVC VSIAWKPPIN GWVCLNTDGA SKDNQ
//
