ID A0A2K3PLQ4_TRIPR Unreviewed; 975 AA.
AC A0A2K3PLQ4;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein {ECO:0000313|EMBL:PNY16219.1};
DE Flags: Fragment;
GN ORFNames=L195_g012934 {ECO:0000313|EMBL:PNY16219.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY16219.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY16219.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY16219.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY16219.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY16219.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY16219.1}.
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DR EMBL; ASHM01008344; PNY16219.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3PLQ4; -.
DR STRING; 57577.A0A2K3PLQ4; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3PLQ4; baseline.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProt.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProt.
DR CDD; cd18019; DEXHc_Brr2_1; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 1.10.3380.10; Sec63 N-terminal domain-like domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041094; Brr2_helicase_PWI.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR004179; Sec63-dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR47961; DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED; 1.
DR PANTHER; PTHR47961:SF4; U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF18149; Helicase_PWI; 1.
DR Pfam; PF02889; Sec63; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00973; Sec63; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF158702; Sec63 N-terminal domain-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:PNY16219.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022728};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW Ribonucleoprotein {ECO:0000313|EMBL:PNY16219.1};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 269..453
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 479..681
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 132..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:PNY16219.1"
SQ SEQUENCE 975 AA; 111484 MW; 9E14186292C081BD CRC64;
GGIDDEDMED ANEGMNLNVQ DIDAYWLQRK ISHSFEQQID PQQCQKLAGE VLNILAEPDD
REVENKLLFH LEFDKFKLIK FLLRNRLKIV WCTRLARAQD QEEREKIEEE MKGSDLLQPI
LEQLHATRAS AKERQKNLEK SIREEARRLK DDTVGDGDKE RDRDRDRSRR GVDRDGESGW
LKGQRQMLDL DNLAFEQGGL FMANKKRDLP YGSYRNLSKG YEEIYVPALK AKPLDPNEKL
WKISAMPDWA QPAFKGMTQL NRVQSKVYET ALSKPDNLLL CAPTGAGKTN VAVLTILQQI
DQHRNPDDGS IDHSAYKIVY VAPMKALVAE VVGNLSNRLQ EYNVKVRELS GDQSLTRQQI
EETQIIVTTP EKWDIITRKS GDRTYTQLVK LLIIDEIHLL HDNRGPVLES IVARTLRQIE
TTKEFIRLVG LSATLPNYED VALFLRVNPD KGLFYFDNSY RPVPLSQQYV GITVKKPLQR
FQLMNDICYE KVMGVAGKHQ VLIFVHSRKE TAKTARAIRD AALANDTLGR FLKEDSASRE
ILQTHTDLVK SSDLKDLLPY GFAIHHAGMT RTDRQLVEDL FADGHAQVLV STATLAWGVN
LPAHTVIIKG TQIYNPEKGA WTELSPLDVM QMLGRAGRPQ YDSYGEGIIV TGHSELQYYL
SLMNQQLPIE SQFISKLADQ LNAEIVLGTV QNAKEACHWL EYTYLSVRME RNPSLYGLAQ
DALTRDETLE EERSHSKKKI LEERRADLIH TAATILDRNN LVKYDRKSGY FQVTDLGRIA
SYYYITHGTI STYNEHLKPT MGDIELCRLF SLSEEFKYVT VRQDEKMELA KLLDRVPIPI
KESLEEPSAK INVLLQAYIS QLKLEGLSMT SDMVFITQSA GRLLRALFEI VLKRGWAQLA
EKALNLCKMV TKRMWSVQTP LRQFNGIPSD ILKSLEKKDL AWESPLLAQF WGLSLQLLQI
LHGMTEYMDM LSRSG
//
