ID A0A2K3PNR6_TRIPR Unreviewed; 400 AA.
AC A0A2K3PNR6;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 24-JAN-2024, entry version 16.
DE RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0000259|Pfam:PF14244};
DE Flags: Fragment;
GN ORFNames=L195_g013667 {ECO:0000313|EMBL:PNY16936.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY16936.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY16936.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY16936.1}.
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DR EMBL; ASHM01008933; PNY16936.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3PNR6; -.
DR STRING; 57577.A0A2K3PNR6; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR InterPro; IPR029472; Copia-like_N.
DR PANTHER; PTHR33918; OS01G0704200 PROTEIN; 1.
DR PANTHER; PTHR33918:SF2; OS01G0704200 PROTEIN; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 180..200
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 212..237
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 267..285
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 291..309
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 369..392
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 3..34
FT /note="Retrotransposon Copia-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF14244"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:PNY16936.1"
SQ SEQUENCE 400 AA; 44913 MW; FC70DA37B2B7D01D CRC64;
YVHPSDGPTS VVVKPVLTHS NYQAWAQSMK RALKLSLSQG LFVNQITGSQ LRIYTKVPWM
YNHLKGLFAH GPKLKVSWLD KSHQFKFING RPQLKGRFQK QQNALFVVSE DRSQNNELEI
ATSVPENNNN IAQDISPASN PSFYLSGNDG KPGFISFYNR PYRRDSEILL SNPERSQNSI
LWFVGPAFLV ASFIFPSLYL RKLLSIIFED SLLTDFLILF FTEAIFYGGV AVFLSLLDHL
RRPIQLDTAT KNTETLPPQL GQRISSVATL VLSLVIPMVT MGLVWPWTGP AASATLAPYL
VGIIVQFAFE QYARYRKSPS WSAIPLIFQI YRLHQLNRAA QLVTALSFTV RGAELTPHNM
AIHSSLGTLL NALQFLGVIC IWSLSSFLVR FIPSASTSMQ
//