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Database: UniProt
Entry: A0A2K3PNR6_TRIPR
LinkDB: A0A2K3PNR6_TRIPR
Original site: A0A2K3PNR6_TRIPR 
ID   A0A2K3PNR6_TRIPR        Unreviewed;       400 AA.
AC   A0A2K3PNR6;
DT   28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT   28-MAR-2018, sequence version 1.
DT   24-JAN-2024, entry version 16.
DE   RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0000259|Pfam:PF14244};
DE   Flags: Fragment;
GN   ORFNames=L195_g013667 {ECO:0000313|EMBL:PNY16936.1};
OS   Trifolium pratense (Red clover).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX   NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291};
RN   [1] {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNY16936.1};
RX   PubMed=24500806; DOI=10.3732/ajb.1300340;
RA   Istvanek J., Jaros M., Krenek A., Repkova J.;
RT   "Genome assembly and annotation for red clover (Trifolium pratense;
RT   Fabaceae).";
RL   Am. J. Bot. 101:327-337(2014).
RN   [2] {ECO:0000313|EMBL:PNY16936.1, ECO:0000313|Proteomes:UP000236291}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC   TISSUE=Young leaves {ECO:0000313|EMBL:PNY16936.1};
RX   PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA   Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT   "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT   (Trifolium pratense) Breeding.";
RL   Front. Plant Sci. 8:367-367(2017).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PNY16936.1}.
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DR   EMBL; ASHM01008933; PNY16936.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2K3PNR6; -.
DR   STRING; 57577.A0A2K3PNR6; -.
DR   Proteomes; UP000236291; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   InterPro; IPR029472; Copia-like_N.
DR   PANTHER; PTHR33918; OS01G0704200 PROTEIN; 1.
DR   PANTHER; PTHR33918:SF2; OS01G0704200 PROTEIN; 1.
DR   Pfam; PF14244; Retrotran_gag_3; 1.
PE   4: Predicted;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        180..200
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        212..237
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        267..285
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        291..309
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        369..392
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          3..34
FT                   /note="Retrotransposon Copia-like N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF14244"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:PNY16936.1"
SQ   SEQUENCE   400 AA;  44913 MW;  FC70DA37B2B7D01D CRC64;
     YVHPSDGPTS VVVKPVLTHS NYQAWAQSMK RALKLSLSQG LFVNQITGSQ LRIYTKVPWM
     YNHLKGLFAH GPKLKVSWLD KSHQFKFING RPQLKGRFQK QQNALFVVSE DRSQNNELEI
     ATSVPENNNN IAQDISPASN PSFYLSGNDG KPGFISFYNR PYRRDSEILL SNPERSQNSI
     LWFVGPAFLV ASFIFPSLYL RKLLSIIFED SLLTDFLILF FTEAIFYGGV AVFLSLLDHL
     RRPIQLDTAT KNTETLPPQL GQRISSVATL VLSLVIPMVT MGLVWPWTGP AASATLAPYL
     VGIIVQFAFE QYARYRKSPS WSAIPLIFQI YRLHQLNRAA QLVTALSFTV RGAELTPHNM
     AIHSSLGTLL NALQFLGVIC IWSLSSFLVR FIPSASTSMQ
//
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